CF504253

Overview
NameCF504253
Unique NameCF504253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504253_ssr473 microsatellite CF504253_ssr473:473..484. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7921 contig Csv1_Contig7921:66..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504253 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 85/171 (49.71%), Postives = 101/171 (59.06%), Query Frame = 2 
Query:   47 MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSM 556
            M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P  QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLPS+
Sbjct:    1 METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPGLQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSV 146
The following BLAST results are available for this feature:
BLAST of CF504253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH7.665e-3449.71Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-742 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504253 ID=CF504253; Name=CF504253; organism=Citrus sinensis; type=EST; length=556bp
TGATTGATTGGGATTTGGATCTGGTACCTGAGAAAAGGATTTTGAAATGG
ATCTTAAAGAGGGACTGCGTGCAGAGACTTGGGCGAAGTCTTCTTTGGCT
GAAAATGAGATGTCAAAAAGGATTTCGTCTAATAACCCATGTTTTACCGA
TTTCAATTCACAGCAATACCAGCAGAAGTGGGAAGATCCCTCCATCTTAG
ATTATGACATTAGGATCAATCCAGCATTTCAAGAATTCAATCAACCTCCT
CAAAACCAATCCTCACTCCCTTGTGACCCCACTAACCAAATTAAAAATCC
ATTCCAGATGAATGAGAATCTCCAAACCAACAAAATGCAAGATTGGGATC
CAAAAGCAATGCTAAATAATCTTTCATTTTTGGAACAAAAGATCCATGAG
CTTCAGGATTTGGTCCACTTAATTGTGGGCCGGAGGAGCCAAATTTTGGG
TCGACCAGATGAACTTGTAGCTCAGCAGCAGCAGCTCATTACTGCAGATC
TCACTTCAATTATTGTTCAGTTAATCTCCACAGCTGGTAGTCTTCTCCCA
TCCATG
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