CF504257

Overview
NameCF504257
Unique NameCF504257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX5_MEDTR (Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.993e-27
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGILFQLFYG+LGSW
Sbjct:   50 SCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGILGSW 88

HSP 2 Score: 62.003 bits (149), Expect = 7.993e-27
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:   23 KMAADKXXXXXXXXXXXEMETEGKP-QNMKSKLSNFFWHGGSVYDAWFS 166
            +MA DK           EME+EGKP Q++KSKLSNF WHGGS YDAWFS
Sbjct:    2 EMANDKVAETVIVGNYVEMESEGKPPQDIKSKLSNFLWHGGSAYDAWFS 50
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX2_ARATH (Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.025e-24
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGILFQLFYG+LGSW
Sbjct:   48 SCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGILGSW 86

HSP 2 Score: 53.9138 bits (128), Expect = 2.025e-24
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:   74 EMETEGKPQNMKSKLSNFFWHGGSVYDAWFS 166
            EME +GK  ++KSKLS+ FWHGGS YDAWFS
Sbjct:   18 EMEKDGKALDIKSKLSDMFWHGGSAYDAWFS 48
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX3_ARATH (Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.820e-23
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGM+SGILFQLFYGL+GSW
Sbjct:   52 SCASNQVAQVLLTLPYSFSQLGMMSGILFQLFYGLMGSW 90

HSP 2 Score: 50.8322 bits (120), Expect = 2.820e-23
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 2 
Query:   74 EMETE------GKPQNMKSKLSNFFWHGGSVYDAWFS 166
            EME E       K  + K+KLSNFFWHGGSVYDAWFS
Sbjct:   16 EMEREEENISGNKKSSTKTKLSNFFWHGGSVYDAWFS 52
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX3_MEDTR (Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.102e-22
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGILFQ+FYGL+GSW
Sbjct:   47 SCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLMGSW 85

HSP 2 Score: 46.595 bits (109), Expect = 5.102e-22
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:   74 EMETEGKPQNMKSKLSNFFWHGGSVYDAWFS 166
            E E EG  ++   KLS FFWHGGSVYDAWFS
Sbjct:   18 EREEEGS-KSTTGKLSKFFWHGGSVYDAWFS 47
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX1_MEDTR (Auxin transporter-like protein 1 OS=Medicago truncatula GN=LAX1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.540e-20
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGM+SGI+FQ+FYGL+GSW
Sbjct:   53 SCASNQVAQVLLTLPYSFSQLGMISGIIFQVFYGLMGSW 91

HSP 2 Score: 41.2022 bits (95), Expect = 7.540e-20
Identity = 18/31 (58.06%), Postives = 19/31 (61.29%), Query Frame = 2 
Query:   74 EMETEGKPQNMKSKLSNFFWHGGSVYDAWFS 166
            E   E K  +  S   NF WHGGSVYDAWFS
Sbjct:   23 EEREEEKGASPGSGFKNFLWHGGSVYDAWFS 53
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: AUX1_ARATH (Auxin transporter protein 1 OS=Arabidopsis thaliana GN=AUX1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.804e-20
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGI+ Q+FYGLLGSW
Sbjct:   54 SCASNQVAQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSW 92

HSP 2 Score: 41.5874 bits (96), Expect = 9.804e-20
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2 
Query:  110 SKLSNFFWHGGSVYDAWFS 166
            S LSNF WHGGSV+DAWFS
Sbjct:   36 SNLSNFLWHGGSVWDAWFS 54
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX3_ORYSJ (Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica GN=Os10g0147400 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.731e-19
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSF+QLGM SG+LFQLFYGLLGSW
Sbjct:   69 SCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYGLLGSW 107

HSP 2 Score: 38.891 bits (89), Expect = 4.731e-19
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2 
Query:   74 EMETEGKPQNMKSKLSNFFWHGGSVYDAWFS 166
            E    G+    +++LS   WHGGS YDAWFS
Sbjct:   39 ESSEMGEKTAARTRLSGLLWHGGSAYDAWFS 69
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX2_MEDTR (Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.356e-18
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGIL Q+FYG+LGSW
Sbjct:   54 SCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGILGSW 92

HSP 2 Score: 37.7354 bits (86), Expect = 1.356e-18
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 2 
Query:   86 EGKPQNMKSKLSNFFWHGGSVYDAWFS 166
            E + ++    + NF WHGGSV+DAWFS
Sbjct:   28 EEEVEDHSFSVKNFLWHGGSVWDAWFS 54
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX4_ORYSJ (Putative auxin transporter-like protein 4 OS=Oryza sativa subsp. japonica GN=Os11g0169200 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-18
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGM SG+ FQ+FYGL+GSW
Sbjct:   61 SCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSW 99

HSP 2 Score: 39.6614 bits (91), Expect = 1.357e-18
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 2 
Query:  107 KSKLSNFFWHGGSVYDAWFS 166
            K  +S+ FWHGGSVYDAWFS
Sbjct:   42 KLAVSSLFWHGGSVYDAWFS 61
[Close]
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX2_ORYSJ (Auxin transporter-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0447200 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.982e-18
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSG+L Q+FYGL+GSW
Sbjct:   53 SCASNQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSW 91

HSP 2 Score: 37.3502 bits (85), Expect = 2.982e-18
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 2 
Query:   89 GKPQNMKSKLSNFFWHGGSVYDAWFS 166
            G  Q+ K  +++  WHGGSV+DAWFS
Sbjct:   28 GVEQDGKFSMTSLLWHGGSVWDAWFS 53
The following BLAST results are available for this feature:
BLAST of CF504257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX5_MEDTR7.993e-2792.31Auxin transporter-like protein 5 OS=Medicago trunc... [more]
LAX2_ARATH2.025e-2492.31Auxin transporter-like protein 2 OS=Arabidopsis th... [more]
LAX3_ARATH2.820e-2389.74Auxin transporter-like protein 3 OS=Arabidopsis th... [more]
LAX3_MEDTR5.102e-2289.74Auxin transporter-like protein 3 OS=Medicago trunc... [more]
LAX1_MEDTR7.540e-2084.62Auxin transporter-like protein 1 OS=Medicago trunc... [more]
AUX1_ARATH9.804e-2087.18Auxin transporter protein 1 OS=Arabidopsis thalian... [more]
LAX3_ORYSJ4.731e-1987.18Auxin transporter-like protein 3 OS=Oryza sativa s... [more]
LAX2_MEDTR1.356e-1887.18Auxin transporter-like protein 2 OS=Medicago trunc... [more]
LAX4_ORYSJ1.357e-1882.05Putative auxin transporter-like protein 4 OS=Oryza... [more]
LAX2_ORYSJ2.982e-1884.62Auxin transporter-like protein 2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-746 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504257 ID=CF504257; Name=CF504257; organism=Citrus sinensis; type=EST; length=283bp
TTAGTATTAGAGAAGCAGGGCTAAAATGGCAGCTGATAAGGTAGTGGAGA
CAGTGGTTGTCGGGAACTATGTCGAAATGGAGACTGAAGGGAAGCCACAG
AACATGAAATCAAAGCTTTCCAATTTCTTTTGGCATGGTGGCTCTGTTTA
CGATGCTTGGTTTAGCCTGTTCGTCAAATCAGGTGGCTCAAGTGCTACTC
ACTTTGCCGTATTCATTTTCCCAGCTGGGGATGCTCTCCGGGATCCTCTT
TCAGCTCTTCTATGGGTTGCTTGGGAGCTGGAC
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