CF504264

Overview
NameCF504264
Unique NameCF504264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:47..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 5.464e-76
Identity = 139/155 (89.68%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            MAF KAQK+KAYFKR+QVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTG
Sbjct:    1 MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTG 155          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 1.346e-74
Identity = 135/155 (87.10%), Postives = 147/155 (94.84%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTG
Sbjct:    1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTG 155          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 1.758e-74
Identity = 135/155 (87.10%), Postives = 147/155 (94.84%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTG
Sbjct:    1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTG 155          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 3.102e-71
Identity = 130/153 (84.97%), Postives = 140/153 (91.50%), Query Frame = 3
Query:   15 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            FVK QK+ AY+KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTG
Sbjct:    4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 9.027e-71
Identity = 130/153 (84.97%), Postives = 139/153 (90.85%), Query Frame = 3
Query:   15 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            FVK QK+ AY KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTG
Sbjct:    4 FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.593e-67
Identity = 128/153 (83.66%), Postives = 136/153 (88.89%), Query Frame = 3
Query:   15 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            FVK QK+ AYFKRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTG
Sbjct:    7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.495e-57
Identity = 110/156 (70.51%), Postives = 127/156 (81.41%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVE-PADTRRPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTG
Sbjct:    1 MPFVKVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 6.280e-56
Identity = 106/155 (68.39%), Postives = 124/155 (80.00%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            M  VK  K+KAYFKR+QVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI+AQ+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTG 155          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 1.399e-55
Identity = 106/156 (67.95%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVKYKRRR+GKTDY AR RL+ QDKNKYNTPKYR +VRFTNKDI+ QI  A I GD V+ AAYAHELPRYG++VGLTNYAAAYCTGLLL+RR+L    +D+ YEG  E  G+++ VE  D +   FRA LDVGL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.399e-55
Identity = 104/155 (67.10%), Postives = 125/155 (80.65%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            M  VK  K+KAYFKR+QVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD++AQ+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTG 155          
The following BLAST results are available for this feature:
BLAST of CF504264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL5_CUCSA5.464e-7689.6860S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH1.346e-7487.1060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.758e-7487.1060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI3.102e-7184.9760S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ9.027e-7184.9760S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ1.593e-6783.6660S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO1.495e-5770.5160S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_CAEBR6.280e-5668.3960S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_STYCL1.399e-5567.9560S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_CAEEL1.399e-5567.1060S ribosomal protein L5 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-753 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504264 ID=CF504264; Name=CF504264; organism=Citrus sinensis; type=EST; length=475bp
TTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAG
CGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAG
AGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCA
AGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATA
GTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCA
TGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAG
CTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAA
ATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTC
TGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTG
GGCTCATCAAAACAACAACTGGAAA
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