CF504266

Overview
NameCF504266
Unique NameCF504266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9272 contig Csv1_Contig9272:72..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.231e-15
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            EIRYRGVRKRPWGRYAAEIRDPGKKT
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKT 47          

HSP 2 Score: 41.9726 bits (97), Expect = 2.231e-15
Identity = 32/114 (28.07%), Postives = 41/114 (35.96%), Query Frame = 2
Query:   95 GRKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPT-----PNEILGTLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALN-SYRNAGACFPVATARPVLFFDVFSSG 418
            G+K  VWLGTFDT                GAKAKTNFPT       ++    AR                             L L+      G+C+ +  +RPV F D+   G
Sbjct:   44 GKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPSQSSTLDCASPPTLVVPSATAGNVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIG 157          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.979e-14
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            E+ YRGVRKRPWGRYAAEIRDPGKK+
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKS 49          

HSP 2 Score: 41.5874 bits (96), Expect = 3.979e-14
Identity = 20/42 (47.62%), Postives = 22/42 (52.38%), Query Frame = 2
Query:   95 GRKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 220
            G+K  VWLGTFDT                G KAKTNFP+P E
Sbjct:   46 GKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.997e-14
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            E+ +RGVRKRPWGRYAAEIRDPGKKT
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKT 55          

HSP 2 Score: 41.5874 bits (96), Expect = 3.997e-14
Identity = 20/42 (47.62%), Postives = 22/42 (52.38%), Query Frame = 2
Query:   95 GRKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 220
            G+K  VWLGTFDT                G+KAKTNFP P E
Sbjct:   52 GKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.167e-14
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            E+ YRGVRKRPWGRYAAEIRDPGKK+
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKS 49          

HSP 2 Score: 41.2022 bits (95), Expect = 5.167e-14
Identity = 20/42 (47.62%), Postives = 22/42 (52.38%), Query Frame = 2
Query:   95 GRKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 220
            G+K  VWLGTFDT                G KAKTNFP P+E
Sbjct:   46 GKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.550e-12
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    4 PNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKT 105
            PN +    EIR+RGVRKRPWGR+AAEIRDP KKT
Sbjct:   17 PNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKT 50          

HSP 2 Score: 35.039 bits (79), Expect = 1.550e-12
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 2
Query:   98 RKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 214
            +K  VWLGTFD+                G KAKTNFP P
Sbjct:   48 KKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.029e-12
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            E+ YRGVRKRPWGRYAAEIRDP KKT
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKT 34          

HSP 2 Score: 37.3502 bits (85), Expect = 2.029e-12
Identity = 18/39 (46.15%), Postives = 20/39 (51.28%), Query Frame = 2
Query:   98 RKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 214
            +K  VWLGTFDT                G KAKTNFP+P
Sbjct:   32 KKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.807e-12
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 IRYRGVRKRPWGRYAAEIRDPGKKT 105
            +RYRGVRKRPWGRYAAEIRDP KK+
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKS 42          

HSP 2 Score: 36.965 bits (84), Expect = 9.807e-12
Identity = 19/40 (47.50%), Postives = 20/40 (50.00%), Query Frame = 2
Query:   98 RKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 217
            +K  VWLGTFDT                GAKAKTNFP  N
Sbjct:   40 KKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79          
BLAST of CF504266 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.133e-11
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   28 EIRYRGVRKRPWGRYAAEIRDPGKKT 105
            EIRYRGVRKRPWGRYAAEIRDP KKT
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKT 53          

HSP 2 Score: 31.9574 bits (71), Expect = 2.133e-11
Identity = 16/36 (44.44%), Postives = 17/36 (47.22%), Query Frame = 2
Query:   98 RKPCVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 205
            +K  VWLGTFDT                G KAKTNF
Sbjct:   51 KKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
The following BLAST results are available for this feature:
BLAST of CF504266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ERF78_ARATH2.231e-15100.00Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF4_TOBAC3.979e-1488.46Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF80_ARATH3.997e-1488.46Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_NICSY5.167e-1488.46Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF3_TOBAC1.550e-1273.53Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF81_ARATH2.029e-1288.46Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH9.807e-1288.00Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF79_ARATH2.133e-1196.15Ethylene-responsive transcription factor 8 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-755 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504266 ID=CF504266; Name=CF504266; organism=Citrus sinensis; type=EST; length=462bp
AACCCGAATCCGAATTCGAAGGATATGGAGATCCGATACAGAGGAGTGAG
GAAGCGGCCGTGGGGGCGTTACGCCGCCGAGATCCGGGACCCGGGGAAGA
AAACCCTGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCAGCACG
TGCCTACGACGCAGCAGCGCGTGAGTTCCGCGGCGCCAAAGCCAAGACAA
ACTTCCCAACGCCAAACGAAATCCTTGGCACCCTCGCCCGCAGCCCCAGC
CAGAGCAGCACCGTGGAGTCATCCTCTCCTCCTCCGCCGACGCTGCTGCC
ACAGCCACAGCCGCTGCCACAGCTAAACCTAGCTCTCAACAGCTACCGTA
ATGCCGGCGCGTGCTTCCCAGTCGCCACGGCGCGTCCGGTCCTTTTCTTC
GACGTTTTCTCCTCCGGTGGTACTGTTGCGACTCACCGTGATGCACGCCG
TGTTGGTTTTTA
back to top