CF504267

Overview
NameCF504267
Unique NameCF504267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13205 contig Csv1_Contig13205:549..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 7.084e-83
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 1
Query:    1 KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            KDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct:  164 KDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 315          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 1.208e-82
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 1
Query:    1 KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            KD+ FYGGHGIVGAQIPLGCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct:  160 KDASFYGGHGIVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 311          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 1.336e-81
Identity = 139/152 (91.45%), Postives = 148/152 (97.37%), Query Frame = 1
Query:    1 KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            K+S FYGGHGIVGAQ+PLGCG+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct:  156 KESSFYGGHGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 9.574e-80
Identity = 136/152 (89.47%), Postives = 146/152 (96.05%), Query Frame = 1
Query:    1 KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            K+SGFYGGHGIVGAQ+PLG GLAFAQKY K++ VTFA+YGDGAANQGQLFEALN+AALWDLPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGL+VDGMD  AVKQAC FAK+HALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct:  158 KESGFYGGHGIVGAQVPLGIGLAFAQKYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLRVDGMDVFAVKQACTFAKQHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 309          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.259e-55
Identity = 99/149 (66.44%), Postives = 122/149 (81.88%), Query Frame = 1
Query:   10 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            GFYGG+GIVGAQ+PLG GLAFA +Y  ++  +FALYGDGA+NQGQ+FE+ N+A LW+LPA+  CENN YGMGTA  R++    Y+KRG Y+PGLKV+GMD LAV QA KFAK+  +  NGP++LE +TYRY GHSMSDPG+TYRTRDEI
Sbjct:  171 GFYGGNGIVGAQVPLGAGLAFAHQYKHEDACSFALYGDGASNQGQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEI 319          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.392e-54
Identity = 97/149 (65.10%), Postives = 119/149 (79.87%), Query Frame = 1
Query:   10 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            GFYGG+GIVGAQ+PLG GLAFA +Y  ++  +F LYGDGA+NQGQ+FE+ N+A LW+LP +  CENN YGMGTA  R++    Y+KRG Y+PGLKV+GMD LAV QA KFAK+  L   GP++LE +TYRY GHSMSDPG+TYRTRDEI
Sbjct:  179 GFYGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEI 327          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 9.024e-54
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            FYGG+GIVGAQ PLG G+AFAQKY+K   V  A+YGDGAANQGQLFEA N+A+LW LP I +CENN YGMGT++ R+     +Y RG YV GLKVDGMD  AVK+A K+A E     NGP+ILEMDTYRY GHSMSDPG TYRTR+E++
Sbjct:  151 FYGGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFICENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEVN 299          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.179e-53
Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY++ + +   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PG+ VDGMD L V++A KFA  +     GPM++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  133 FYGGNGIVGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQTYRYHGHSMSDPGVSYRTREEI 280          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.539e-53
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.539e-53
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
The following BLAST results are available for this feature:
BLAST of CF504267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_PEA7.084e-8393.42Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA2_ARATH1.208e-8293.42Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA1_ARATH1.336e-8191.45Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_SOLTU9.574e-8089.47Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_KLULA1.259e-5566.44Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_YEAST1.392e-5465.10Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_DICDI9.024e-5467.11Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA1.179e-5364.19Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RAT1.539e-5364.86Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE1.539e-5364.86Pyruvate dehydrogenase E1 component subunit alpha,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-756 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504267 ID=CF504267; Name=CF504267; organism=Citrus sinensis; type=EST; length=456bp
AAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAGATTCC
TTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGG
TGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTC
GAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTG
CGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGA
GTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGAT
GGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCA
TGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATC
ATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAG
ATCAGT
back to top