CF504269

Overview
NameCF504269
Unique NameCF504269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:763..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.175e-56
Identity = 111/121 (91.74%), Postives = 111/121 (91.74%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVES          ATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK
Sbjct:  238 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 358          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.345e-52
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE K
Sbjct:  243 QLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGK 363          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.345e-52
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE K
Sbjct:  242 QLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGK 362          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.294e-52
Identity = 101/121 (83.47%), Postives = 105/121 (86.78%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRKK  EE +
Sbjct:  240 QLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGR 360          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.717e-52
Identity = 100/121 (82.64%), Postives = 104/121 (85.95%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRK   EE +
Sbjct:  240 QLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGR 360          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.942e-51
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            +LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS+EE K
Sbjct:  238 ELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFTPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSIEEGK 358          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.942e-51
Identity = 100/119 (84.03%), Postives = 102/119 (85.71%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKK  EE
Sbjct:  240 QLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEE 358          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.536e-51
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            +L+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+FWIAHPGGPAILDQVES          ATR VLSEYGNMSSACVLFILDEMR+ S+E  K
Sbjct:  238 ELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGK 358          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.650e-51
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVST+QTILPDSDG+IDGHLRE GLTFHLLKDVPGLISKNI+KSL+EAF PLGISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS E+
Sbjct:  237 ELVSTAQTILPDSDGSIDGHLREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAED 355          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.644e-50
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE           ATR VLSEYGNMSSACVLFILDEMR+KSVE+
Sbjct:  244 EMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSVED 362          
The following BLAST results are available for this feature:
BLAST of CF504269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI1.175e-5691.74Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR1.345e-5282.64Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA1.345e-5282.64Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS2_RUTGR2.294e-5283.47Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS1_RUTGR8.717e-5282.64Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHSY_VITVI1.942e-5181.82Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHS3_RUTGR1.942e-5184.03Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_BETVE2.536e-5180.99Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS1_CITSI5.650e-5182.35Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_SINAL1.644e-5081.51Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-758 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504269 ID=CF504269; Name=CF504269; organism=Citrus sinensis; type=EST; length=365bp
ATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCA
ATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGA
CGTCCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGT
TCGCCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCAC
CCCGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAA
AGGGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACA
TGTCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GTTGAGGAAGCGAAA
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