CF504271

Overview
NameCF504271
Unique NameCF504271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length190
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:472..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.145e-13
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E++DA EA K AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N
Sbjct:  229 EVLDAAEAFKAAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETN 276          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.718e-13
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    9 IDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            IDA EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLFEAN
Sbjct:  135 IDAGEAFRLAGIPSGFFELQPKEGLALVNGTAVGSGLASMVLFEAN 180          

HSP 2 Score: 21.557 bits (44), Expect = 6.718e-13
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  146 LPLLSEILSAYFC 184
            L +LSE++SA FC
Sbjct:  182 LSVLSEVISAIFC 194          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.152e-13
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            EI++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLAS+VLFEAN
Sbjct:  238 EILNAREAFQSAGINDGFFELQPKEGLALVNGTAVGSGLASIVLFEAN 285          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E+++A+ A  QAG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN
Sbjct:  225 EVLNAESAFAQAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEAN 272          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.816e-12
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E + A+EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN
Sbjct:  222 EALTAEEAFKLAGVQGGFFELQPKEGLALVNGTAVGSGMASMVLFEAN 269          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.098e-12
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            EI+  +EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLFEAN
Sbjct:  228 EILHPKEAFRLAGVEGGFFELQPKEGLALVNGTAVGSGLASMVLFEAN 275          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.098e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E ++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLF+AN
Sbjct:  226 ETLNAEEAFRVAGVNSGFFELQPKEGLALVNGTAVGSGLASMVLFDAN 273          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.098e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E ++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLF+AN
Sbjct:  226 ETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGLASMVLFDAN 273          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.046e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E I+A+EA + AG   GFFELQPKEGLALVNGTAVGSG+ASMVL+EAN
Sbjct:  224 EKINAEEAFRLAGISTGFFELQPKEGLALVNGTAVGSGMASMVLYEAN 271          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.168e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    9 IDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            ++A EA K AG   GFFELQPKEGLA+VNGTAVGSGLASMVLFEAN
Sbjct:  216 VNAAEAFKIAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEAN 261          

HSP 2 Score: 20.7866 bits (42), Expect = 4.168e-12
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  146 LPLLSEILSAYFC 184
            L LL+E+LS  FC
Sbjct:  263 LSLLAEVLSGVFC 275          
The following BLAST results are available for this feature:
BLAST of CF504271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PALY_POPTR2.145e-1381.25Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PALY_PERAE6.718e-1384.78Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_PEA8.152e-1379.17Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PALY_HELAN1.065e-1277.08Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL2_IPOBA1.816e-1279.17Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PALY_CAMSI3.098e-1279.17Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL3_TOBAC3.098e-1277.08Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL2_TOBAC3.098e-1277.08Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_LITER4.046e-1277.08Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PALY_WHEAT4.168e-1280.43Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-760 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504271 ID=CF504271; Name=CF504271; organism=Citrus sinensis; type=EST; length=190bp
GAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGTTTCGGGTTC
TTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAATGGCACTGCTGT
TGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCCTTGCC
TCTGTTATCAGAAATTTTGTCAGCCTATTTTTGCCTGAAG
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