CF504287
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37 Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 VTEEG VAVS GC +L+ +LYFC QMTNAA+ T+ +NCPNFT FRLCI+ PG PD +T++P+DE FGA+V+ C LQRLS+SGLLTD F YIGKYAK LE LS Sbjct: 354 VTEEGLVAVSLGCPKLNSLLYFCHQMTNAALVTVAKNCPNFTRFRLCILEPGKPDVVTSQPLDEGFGAIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLS 457
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35 Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 VTEEG VA+S GC +LH +LYFC+QMTNAA+ T+ +NCPNF FRLCI+ P PD++T++P+DE FGA+VK C L+RLS+SGLLTD F YIG YA LE LS Sbjct: 354 VTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLS 457
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 3.089e-33 Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 +TE+G V+VS GC +L VLYFCRQMTNAA+ TI +N PN T FRLCI+ P PDYLT EP+D FGA+V+ C L+RLS+SGLLTD FEYIG YAK +E LS Sbjct: 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.533e-32 Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 2 Query: 11 DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 +E+ VTE G VA+S GC +LH +LYFC+QMTNAA+ + +NCPNF FRLCI+ P PD++T + +DE FGA+V+ C L+RLSVSGLLTD F YIG YA+ LE LS Sbjct: 349 EEDNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLS 459
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32 Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 VTEEG VA+S GC +L VLYFC++MTN+A+ T+ +NCP FT FRLC++ PG D +T +P+DE +GA+V++C L+RL +SGLLTD F YIG YA+ LE LS Sbjct: 348 VTEEGLVAISAGCNKLQSVLYFCQRMTNSALITVAKNCPRFTSFRLCVLDPGSADAVTGQPLDEGYGAIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLS 451
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.197e-30 Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 V+E G A+S GCR+L +LYFC++MTNAAV + +NCP T FRLCIM PD++T +PMDE FGA+VK C KL RL+VSGLLTD F Y+G+Y K + TLS Sbjct: 405 VSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLS 508
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 4.616e-29 Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 V+ G A+S GCR+L +LYFC+ MTN AV + +NCP T FRLCIM PD++T +PMD+ FGA+VK C KL RL+VSGLLTD F YIG+Y K + TLS Sbjct: 405 VSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLS 508
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.029e-29 Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 +TE G V VS C L VLYFCR+MTN A+ TI +N PNFT FRLCI+ P PDY+T EP+D F A+V++C L+RLS+SGLLTDL F+ IG +A LE LS Sbjct: 370 LTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLS 473
BLAST of CF504287 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 6.665e-28 Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 2 Query: 32 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLS 343 +TE+G V VS GCR+L VLYFC Q TNAA+ TI + PN FRLC++ P PDY TNEP+D+ F A+ + C L+RLSVSGLL+D F+YIGK+AK + LS Sbjct: 355 LTEQGLVFVSKGCRKLESVLYFCVQFTNAALFTIARKRPNLKCFRLCVIEPFAPDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLS 458 The following BLAST results are available for this feature:
BLAST of CF504287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504287 ID=CF504287; Name=CF504287; organism=Citrus sinensis; type=EST; length=345bpback to top |