CF504302

Overview
NameCF504302
Unique NameCF504302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504302 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.669e-60
Identity = 112/159 (70.44%), Postives = 134/159 (84.28%), Query Frame = 3
Query:   60 MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 533
            ME + EFRHWDELIPDALGLIF +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WSNR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L
Sbjct:    1 MEEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSL 159          
BLAST of CF504302 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 3
Query:   75 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITR----SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLR-LPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC 524
            E+R+W EL P+    I   L   E+L     VCKSWRR    P  W++IDI    N      L  ++E L  R    S G L ++ +  L N    + IA+ + +L+ L  +  + +    V + A +L  +  LD++Y S I    L+ +G+ C
Sbjct:   17 EYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSC 171          
BLAST of CF504302 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 50/163 (30.67%), Postives = 77/163 (47.24%), Query Frame = 3
Query:   69 ESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEW-SNRCQPDHL---------DRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC 524
            E +   W  L P+ L  I   L++QE+ T    V KSW      PY W   D+E W  +  +  HL         D M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  IG++C
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNC 163          
The following BLAST results are available for this feature:
BLAST of CF504302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBW2_ARATH5.669e-6070.44F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
FBL9_ARATH3.726e-1130.32Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
SKIP1_ARATH4.866e-1130.67F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-791 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504302 ID=CF504302; Name=CF504302; organism=Citrus sinensis; type=EST; length=533bp
CTGTCTTTTGCGTTTGCCCTACGTTTCAGGCGGACGAACCGTACCTTAAG
GTAGATTAAATGGAAGGAGAAAGTGAGTTTAGGCATTGGGATGAACTAAT
ACCTGATGCTCTTGGGCTGATCTTTAGAAATCTGTCACTCCAGGAGGTAT
TAACCGTGATACCAGGGGTTTGCAAATCATGGCGTAGAGCAGTAATTGGA
CCATATTGCTGGCAAGAGATTGACATTGAGGAATGGAGTAATCGGTGCCA
ACCGGACCACCTCGATCGGATGGTTGAAATGTTGATCACAAGAAGTTCTG
GATCTCTCCGCAAGCTCTGTGTTTCTGGCCTGCACAATGATATGATGTTT
TCCTTGATTGCAGAAAATGCTGGTTCCCTTCAGACATTGCGACTTCCAAG
AAGTGAAATGAGTGACTCCATAGTGGCTCAAATAGCTGGAAGGTTGTCTG
CGGTCACTTTCTTGGATTTGAGCTATTGCAGTAAAATTGGTGCTCCTGCT
TTGGAGGCCATAGGAAAACACTGTAAATTGCTT
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