CF504305

Overview
NameCF504305
Unique NameCF504305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12353 contig Csv1_Contig12353:410..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354
            LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF  +
Sbjct:  564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612          

HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2
Query:   17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            + KRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG
Sbjct:  500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354
            LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF  +
Sbjct:  564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612          

HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2
Query:   17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            + KRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG
Sbjct:  500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354
            LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF  +
Sbjct:  564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612          

HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2
Query:   17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            + KRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG
Sbjct:  500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 1.401e-22
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354
            LNQP Y+  LMPPLI KW  L + DKDLFPLLEC +S+A AL +GF  +
Sbjct:  553 LNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPY 601          

HSP 2 Score: 59.3066 bits (142), Expect = 1.401e-22
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 2
Query:   23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            KRVQEAACS                   IL  L+ AFGKYQ +NL I+YDAIGTLAD+VG
Sbjct:  491 KRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVG 550          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.401e-22
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354
            LNQP Y+  LMPPLI KW  L + DKDLFPLLEC +S+A AL +GF  +
Sbjct:  553 LNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPY 601          

HSP 2 Score: 59.3066 bits (142), Expect = 1.401e-22
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 2
Query:   23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            KRVQEAACS                   IL  L+ AFGKYQ +NL I+YDAIGTLAD+VG
Sbjct:  491 KRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVG 550          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.202e-17
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQFA 357
            LN   Y+++L+ PL+ KW ++P+ D +LFPL EC +S+A AL  GF  FA
Sbjct:  577 LNDKRYIELLITPLLQKWSMIPDDDPNLFPLFECLSSVAVALRDGFAPFA 626          

HSP 2 Score: 48.9062 bits (115), Expect = 4.202e-17
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 2
Query:   23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            K+VQEA CS                   IL +L  AF KYQR+N+ I+YDA+ TLAD VG
Sbjct:  515 KKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLAFAFQKYQRKNVLILYDAVQTLADYVG 574          
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 7.932e-15
Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = 2
Query:   23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202
            K+VQEAACS                  +IL   + AFGKYQ +NL I+YDAI TLA  VG
Sbjct:  528 KKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLAKVVG 587          

HSP 2 Score: 49.2914 bits (116), Expect = 7.932e-15
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  205 QLNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAG 342
            +LN+P  ++IL+PPL+ K+  L +S+K+L PLL C   +  ++GAG
Sbjct:  589 ELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAG 634          
The following BLAST results are available for this feature:
BLAST of CF504305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TNPO1_MOUSE1.401e-2259.18Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN1.401e-2259.18Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN1.401e-2259.18Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_HUMAN1.401e-2261.22Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO2_MOUSE1.401e-2261.22Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
IMB2_SCHPO4.202e-1748.00Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
TNPO_DICDI7.932e-1546.67Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-794 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504305 ID=CF504305; Name=CF504305; organism=Citrus sinensis; type=EST; length=358bp
GTGGATCCCCCGGGCTGCAGGCAAGCGGGTGCAAGAGGCTGCTTGTTCTG
CGTTTGCGACACTTGAAGAGGAGGCTGCAGAAGAGTTAGCACCACGTTTA
GAAATAATCTTACAGCACCTTATGATGGCTTTTGGAAAATATCAGAGACG
GAACCTCAGAATTGTATATGATGCTATTGGAACTCTGGCTGATGCTGTTG
GATTCAACTAAACCAGCCTGTTTATCTTGATATTTTGATGCCACCTTTAA
TTGCAAAGTGGCAGCTGCTTCCAAATTCAGATAAAGATCTCTTTCCACTG
CTTGAGTGTTTTACATCCATAGCACAGGCATTGGGCGCTGGATTCACTCA
ATTTGCTC
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