CF504308

Overview
NameCF504308
Unique NameCF504308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.252e-46
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGA 380
            ALGCEFLKNLALMGVSC ++GKLTITDDD+IEKSNLSRQFLFRDWNIGQAKSTV       INP L+ +ALQ RA P+TENVF+DTFWE              R+Y+D RCLYFQKPLLESGTLGA
Sbjct:  475 ALGCEFLKNLALMGVSCSSKGKLTITDDDIIEKSNLSRQFLFRDWNIGQAKSTVAATAASAINPSLHIDALQNRACPDTENVFHDTFWEGLDVVINALDNVNARMYMDMRCLYFQKPLLESGTLGA 600          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.252e-46
Identity = 89/126 (70.63%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGA 380
            ALGCEFLKNLALMG+SC   G LT+TDDDVIEKSNLSRQFLFRDWNIGQ KSTV      +INP L+ EALQ RA+PETENVFND FWE              R+YID RC+YFQKPLLESGTLGA
Sbjct:  472 ALGCEFLKNLALMGISCSQNGNLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMVINPKLHVEALQNRASPETENVFNDAFWENLDAVVNALDNVTARMYIDSRCVYFQKPLLESGTLGA 597          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.472e-46
Identity = 89/126 (70.63%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGA 380
            ALGCEFLKNLALMG+SC   G LT+TDDDVIEKSNLSRQFLFRDWNIGQ KSTV      +INP L+ EALQ RA+PETENVFND FWE              R+YID RC+YFQKPLLESGTLGA
Sbjct:  472 ALGCEFLKNLALMGISCSQNGNLTLTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMVINPKLHVEALQNRASPETENVFNDAFWENLDAVVNALDNVTARMYIDSRCVYFQKPLLESGTLGA 597          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.046e-31
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ CG  G++T+TD D IEKSNL+RQFLFR W+I + KS         INPH+   + Q R  PETE+V++D F++              RLY+D+RC+Y++KPLLESGTLG
Sbjct:  477 AIGCELLKNFAMIGLGCGEDGEITVTDMDTIEKSNLNRQFLFRPWDITKLKSETAAAAVRDINPHIRIFSHQNRVGPETEHVYDDDFFQKLDGVANALDNVDARLYVDRRCVYYRKPLLESGTLG 601          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.120e-29
Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ CG  G++ +TD D IEKSNL+RQFLFR W++ + KS         +NPH+   + Q R  P+TE +++D F++              R+Y+D+RC+Y++KPLLESGTLG
Sbjct:  478 AIGCELLKNFAMIGLGCGENGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVHQMNPHIRVTSHQNRVGPDTERIYDDDFFQTLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLG 602          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.616e-29
Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ CG  G++ +TD D IEKSNL+RQFLFR W++ + KS         +NPH+   + Q R  P+TE +++D F++              R+Y+D+RC+Y++KPLLESGTLG
Sbjct:  478 AIGCELLKNFAMIGLGCGEGGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLG 602          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.056e-29
Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ C   G++ +TD D IEKSNL+RQFLFR W++ + KS         +NPH+   + Q R  P+TE +++D F++              R+Y+D+RC+Y++KPLLESGTLG
Sbjct:  478 AIGCELLKNFAMIGLGCAEDGEIVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVTNALDNVDARMYMDRRCVYYRKPLLESGTLG 602          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.795e-28
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ CG  G++ +TD D IEKSNL+RQFLFR W++ + KS         +NP++   + Q R  P+TE +++D F++              R+Y+D+RC+Y++KPLLESGTLG
Sbjct:  478 AIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLG 602          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.795e-28
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A++G+ CG  G++ +TD D IEKSNL+RQFLFR W++ + KS         +NP++   + Q R  P+TE +++D F++              R+Y+D+RC+Y++KPLLESGTLG
Sbjct:  478 AIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNIDARMYMDRRCVYYRKPLLESGTLG 602          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.519e-27
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHL--NTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN AL+G+  G+ G + +TD+D IEKSNL+RQFLFR  ++G+ KS V       +NP L     A   +  PETE +FND+FWE              R Y+D+RC++++KPLLESGTLG
Sbjct:  444 AIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLG 570          
The following BLAST results are available for this feature:
BLAST of CF504308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE13_WHEAT7.252e-4671.43Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBE12_WHEAT7.252e-4670.63Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT9.472e-4670.63Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBA1Y_MOUSE5.046e-3149.60Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_RABIT2.120e-2944.80Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_HUMAN3.616e-2944.80Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_BOVIN8.056e-2944.00Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_RAT1.795e-2844.00Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE1.795e-2844.00Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_YEAST1.519e-2747.24Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-797 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504308 ID=CF504308; Name=CF504308; organism=Citrus sinensis; type=EST; length=380bp
GTGCTCTGGGGTGTGAGTTCTTAAAAAATCTAGCATTAATGGGGGTTTCT
TGTGGTAACCAAGGGAAGTTGACAATTACAGATGATGATGTCATTGAGAA
GAGCAACCTTAGCAGGCAATTTCTGTTCCGGGATTGGAACATTGGGCAGG
CTAAATCCACAGTTGCTGCTTCTGCAGCTGCTTTGATAAATCCTCATCTA
AATACTGAAGCCTTGCAGATCCGTGCAAACCCAGAGACTGAGAATGTGTT
TAATGATACATTCTGGGAGAATCTGAACGTTGTTGTCAATGCTCTGGATA
ATGTCAATGCCAGGCTTTACATTGACCAGAGGTGCTTATATTTCCAAAAG
CCACTTTTGGAGTCAGGAACTCTAGGTGCC
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