CF504310

Overview
NameCF504310
Unique NameCF504310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10649 contig Csv1_Contig10649:12..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504310 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.103e-28
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 3 
Query:   78 SSNRWSMQSLSSALPSLNXXXXXXXXXXXXXXXXXXXXXXRTQQAPHLFSSYTGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKT 446
            +S  WSM  L SALPS+                       + + +  L  S+ GLA  +PLLSL   D TSFEH    +DNG R+ AMRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKT
Sbjct:    4 ASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRIC-KPKSSSRLLHSFVGLAPLHPLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKT 125
[Close]
BLAST of CF504310 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.503e-26
Identity = 68/125 (54.40%), Postives = 75/125 (60.00%), Query Frame = 3 
Query:   72 DCSSNRWSMQSLSSALPSLNXXXXXXXXXXXXXXXXXXXXXXRTQQAPHLFSSYTGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKT 446
            D  S  WSM SL SALPS                        R   +     S++GL+  NPLLS+G  D  SFE+G   VD G RI AMRHGRRVPKLNRPPDQR+ALLRGLTTQLLKHGRIKT
Sbjct:   14 DSVSRVWSMSSLKSALPST-------ASLRLPSSSSRRPVTLRLPISSPSLPSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKT 131
The following BLAST results are available for this feature:
BLAST of CF504310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK17_TOBAC6.103e-2853.6650S ribosomal protein L17, chloroplastic OS=Nicoti... [more]
RK17_ARATH1.503e-2654.4050S ribosomal protein L17, chloroplastic OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-799 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504310 ID=CF504310; Name=CF504310; organism=Citrus sinensis; type=EST; length=447bp
ATTCTGGTTACATAACAGCAGCTGAAGCGGCAATGGCGATTACAGCTGCA
GTAGCAACGACAACAGCAGCAGATTGTAGTAGCAATAGATGGAGTATGCA
ATCCCTAAGCTCAGCTCTCCCTTCACTTAACTCCATTACTTGTTCTTCAA
TCCGATTCTCATCATCGTCTCACTGCCGCCCAAGTCTCAGTCTCACCCGC
ACCCAACAAGCACCACACCTCTTCTCATCTTACACGGGTCTCGCTTCTAA
CAACCCATTACTCTCCCTCGGCTTCTCCGACCTGACAAGTTTTGAACATG
GTCTCGCTTTCGTGGATAATGGGTGTCGAATTTCTGCAATGAGGCACGGC
AGGCGAGTTCCGAAGCTCAACAGGCCTCCTGACCAACGGCGGGCGCTTCT
CCGTGGCCTCACCACTCAATTGCTTAAGCACGGGAGGATCAAAACCA
back to top