CF504312

Overview
NameCF504312
Unique NameCF504312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504312 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 3 
Query:    3 WFIVIGQFVY-LFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAK 323
            W +V    +Y L    C  TW GFS+ AF  ++P  KL+++S VM+CLE WYN  LV+++G + N TI + + SIC+  ++W+   + G  AA  VRVSNELG G+ +
Sbjct:  242 WLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPR 349
The following BLAST results are available for this feature:
BLAST of CF504312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH1.245e-2142.59Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-801 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504312 ID=CF504312; Name=CF504312; organism=Citrus sinensis; type=EST; length=326bp
GTTGGTTTATAGTAATTGGACAGTTTGTGTATCTCTTTGGCGGTTGGTGT
CCCAATACATGGAAAGGATTCAGTTCTGCAGCTTTTGCTGATTTGTATCC
TGTTTTGAAGCTCTCAATATCCTCAGGTGTAATGATTTGCCTAGAGTTTT
GGTACAATGCTCTTCTAGTCCTATTAGCAGGATATATGAAAAATGCCACA
ATTGAGATTTCTTCCTTCTCCATTTGCCTCAACATCATATCGTGGGAATT
TATGTTGGTCTTTGGCTTCCTAGCTGCCTCTGGTGTGCGGGTTTCAAATG
AACTGGGGAGAGGAGATGCTAAAGCT
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