CF504313

Overview
NameCF504313
Unique NameCF504313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERL2B_XENLA (Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.374e-35
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGHVGVY+RGGALL T + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_RAT (Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_PONAB (Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_MOUSE (Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_HUMAN (Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_BOVIN (Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_XENTR (Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.755e-35
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGHVGVY+RGGALL + + PGFHL LP IT ++ VQ T+QTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDKT I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITSFKSVQSTMQTDEVKNVPCGTSGGVMIYFDRIEVVNYLIPSAVYDIVKNYTADYDKTLIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERL2A_XENLA (Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.856e-34
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGHVGVY+RGGALL T + PGFHL  P IT ++ VQ TLQTD++ ++PCGT GGVMI F++IEVVN L    VY+ ++++   YDK  I++KIHHE+NQFCS H
Sbjct:   24 HKIEEGHVGVYYRGGALLSTTSGPGFHLMFPFITSFKSVQSTLQTDEIKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNFTADYDKALIFNKIHHELNQFCSVH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN1_XENTR (Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.872e-34
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H++ EGH+ VY+RGGALL     PG+H+  P IT++  VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +R+Y   YDKT I++KIHHE+NQFCSSH
Sbjct:   24 HKVEEGHLAVYYRGGALLGGPGDPGYHIMFPFITYFRSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNMLTPSAVYDVVRNYTADYDKTLIFNKIHHELNQFCSSH 131
[Close]
BLAST of CF504313 vs. ExPASy Swiss-Prot
Match: ERLN2_DANRE (Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 3 
Query:  192 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 515
            H+I EGHVGVY+RGGALL   + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY  +R++   YDK  I++K+HHE+NQFCS H
Sbjct:   23 HKIEEGHVGVYYRGGALLTATSGPGFHLMLPFITTFKSVQTTLQTDEVKNVPCGTGGGVMIYFDRIEVVNYLVPSAVYGIVRNFTADYDKALIFNKVHHELNQFCSVH 130
The following BLAST results are available for this feature:
BLAST of CF504313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERL2B_XENLA3.374e-3562.04Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1[more]
ERLN2_RAT4.406e-3561.11Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1[more]
ERLN2_PONAB4.406e-3561.11Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1[more]
ERLN2_MOUSE4.406e-3561.11Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1[more]
ERLN2_HUMAN4.406e-3561.11Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1[more]
ERLN2_BOVIN4.406e-3561.11Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1[more]
ERLN2_XENTR5.755e-3561.11Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1[more]
ERL2A_XENLA2.856e-3459.26Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1[more]
ERLN1_XENTR4.872e-3458.33Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1[more]
ERLN2_DANRE1.085e-3360.19Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-802 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504313 ID=CF504313; Name=CF504313; organism=Citrus sinensis; type=EST; length=515bp
ACATTTTTGGCAACAGTTGAAACCCCGCCATGGATCCACAGCAACAAGGA
GCAGGCGCTACACAGGCACAGCCTCGTCCTCAGCCTGGCGATTCGTCTGC
TATACTCGCCGTGTTCCTCACTTTCATCGCTATTGTCTCACTGATATTGA
TCCCATCATCGTCATCCGTCAAAAGTAGCCTGGCCATTTTGCACCAAATT
CCAGAAGGCCATGTTGGAGTATATTGGAGAGGAGGTGCCCTTCTAGAGAC
AATTACACACCCAGGCTTCCATCTGAAGTTGCCTTTGATAACACACTACG
AGCCTGTTCAAGTGACCCTTCAGACAGATCAGGTTACTGATATTCCATGT
GGGACCAAAGGGGGTGTAATGATCAACTTTGAGAAGATAGAGGTTGTTAA
CCGGCTTCGTAAGGAATATGTGTATGAGACTCTGCGCGACTATGGCGTGC
AATATGACAAGACATGGATATATGACAAGATTCATCATGAGATCAATCAG
TTCTGTAGTTCTCAT
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