CF504320

Overview
NameCF504320
Unique NameCF504320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10117 contig Csv1_Contig10117:15..319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504320 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.894e-32
Identity = 65/87 (74.71%), Postives = 69/87 (79.31%), Query Frame = 3
Query:   45 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRAS 305
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVKKPL+NKRKPKPTKLRAS
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRAS 89          
BLAST of CF504320 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.096e-29
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 3
Query:   63 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRAS 305
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPLVN+RKPKPTKL+AS
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKAS 88          
BLAST of CF504320 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.359e-28
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 3
Query:   42 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRAS 305
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KPTKLRAS
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRAS 88          
BLAST of CF504320 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.371e-27
Identity = 57/88 (64.77%), Postives = 65/88 (73.86%), Query Frame = 3
Query:   42 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRAS 305
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KP KLRAS
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRAS 88          
The following BLAST results are available for this feature:
BLAST of CF504320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL6_MESCR5.894e-3274.7160S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH2.096e-2971.6060S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.359e-2867.0560S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.371e-2764.7760S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-809 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504320 ID=CF504320; Name=CF504320; organism=Citrus sinensis; type=EST; length=305bp
AACTCTCATTCACAGAGGCACAGCAGAAGCGGGTAGCATCAATGGCGCCG
AAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGAGCTGATCCGAGGAAT
TGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGAGGGGTCTCTGGGCAA
TTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCACGACCCCAAGCCCAAA
GCCGCTGCTCCCGCCGAGAAGCCCCCCAAGTTTTACCCCGCCGATGACGT
CAAGAAACCACTCGTCAACAAGCGCAAGCCTAAACCCACCAAACTTAGAG
CAAGC
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