CF504324

Overview
NameCF504324
Unique NameCF504324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:156..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504324 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.878e-27
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   18 PPE-ELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 425
            PPE  L  AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   13 PPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148          
The following BLAST results are available for this feature:
BLAST of CF504324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC4.878e-2743.80Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-813 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504324 ID=CF504324; Name=CF504324; organism=Citrus sinensis; type=EST; length=480bp
GCAGCGCGATCGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGG
ACTCCGTCGCCGAAGACCACATCGACGGCACTGGTCGACCGTTTCCTCCA
GACCAACTCGTCTGCTGTGTCCGTACAGGTCGGGGACAACGTCACCCTCG
CGTACACTCATCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTG
AAAGATGAGATCTTTTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAG
CCTGAGGCAGCAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGG
TGATTGAGGCATACAAGGCTCTGCGTGATCGGGCCCCTTACCCACCGAAC
CATGTCGTTGGCCACCTTAGTGGGTACTTTGCCTTCATTGTCTACGACAA
GTCCACCTCCACCTTGTTTGTGGCTTCTGACCAATTTGGTAAGGTTCCTC
TTTATTGGGGAATCACTGCTGATGGACATG
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