CF504333

Overview
NameCF504333
Unique NameCF504333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5423 contig Csv1_Contig5423:28..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C05_ARATH (Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.390e-45
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 2
Query:  197 MNQTEVPQMKAPLVPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            M+ ++  + +  LVPLATLIGRELR+EK+EKPFVKYGQAALAKKGEDYFLIK DC+R+PG+ S++FSVF IFDGHNG SAAI+TKE LL NV+SAIPQGASRDEWLQALPRALVA
Sbjct:    1 MSVSKASRTQHSLVPLATLIGRELRSEKVEKPFVKYGQAALAKKGEDYFLIKTDCERVPGDPSSAFSVFGIFDGHNGNSAAIYTKEHLLENVVSAIPQGASRDEWLQALPRALVA 115          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C33_ORYSJ (Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica GN=Os03g0301700 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.645e-38
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 2
Query:  227 APLVPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            AP +PLATLIGRELR    E+P V+YG    AK+GEDYFL+KPDC R+PG+ S++FSVFA+FDGHNGVSAA+F+KE LL +V+SA+PQG  RD+WLQALPRALVA
Sbjct:   12 APSLPLATLIGRELRGGGSERPLVRYGHFGFAKRGEDYFLVKPDCLRVPGDPSSAFSVFAVFDGHNGVSAAVFSKEHLLEHVMSAVPQGIGRDDWLQALPRALVA 116          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C15_ARATH (Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 68/103 (66.02%), Postives = 87/103 (84.47%), Query Frame = 2
Query:  233 LVPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            LVPLA LI RE +  K+EKP V++GQAA ++KGEDY LIK D  R+P N+ST+FSVFA+FDGHNG +AA++T+E+LLN+V+SA+P G SRDEWL ALPRALV+
Sbjct:   18 LVPLAALISRETKAAKMEKPIVRFGQAAQSRKGEDYVLIKTDSLRVPSNSSTAFSVFAVFDGHNGKAAAVYTRENLLNHVISALPSGLSRDEWLHALPRALVS 120          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C12_ARATH (Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  236 VPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            VPL+ L+ RE  NEKI+ P + +GQ   +KKGED+ L+K +CQR+ G+  T+FSVF +FDGHNG +AAI+TKE+LLNNVL+AIP   +RDEW+ ALPRALVA
Sbjct:   10 VPLSVLLKRESANEKIDNPELIHGQHNQSKKGEDFTLVKTECQRVMGDGVTTFSVFGLFDGHNGSAAAIYTKENLLNNVLAAIPSDLNRDEWVAALPRALVA 111          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C15_ORYSJ (Probable protein phosphatase 2C 15 OS=Oryza sativa subsp. japonica GN=Os02g0567200 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  227 APLVPLATLIGRELRNEKI--EKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            A  VPLA L+ RE+ +EK   E+P ++ G  + AKKGEDY  +KPDC+R+PG  S+SFS F +FDGHNG  AAI+TKE+LL+N+L+AIP   +R++WL ALPRA+VA
Sbjct:   16 AATVPLAVLLRREVVSEKTAAERPELQVGLFSQAKKGEDYTFLKPDCERLPGVPSSSFSAFGLFDGHNGNGAAIYTKENLLSNILTAIPADLNREDWLAALPRAMVA 122          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C69_ORYSJ (Probable protein phosphatase 2C 69 OS=Oryza sativa subsp. japonica GN=Os09g0459600 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.802e-27
Identity = 60/106 (56.60%), Postives = 81/106 (76.42%), Query Frame = 2
Query:  227 APLVPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDC-QRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            A  VPL  L+ RE+ +E++E+P V  G+AA ++KGED+ L+  +  +R+ G+ STSFSVFA+FDGHNG  AA++ K++LLNN+L AIP G SRDEWL  LPRALVA
Sbjct:    7 AVTVPLGVLLRREVTSERMERPDVLCGEAARSRKGEDFTLLLAEAGERVAGDPSTSFSVFALFDGHNGSGAAMYAKKNLLNNLLRAIPSGLSRDEWLAVLPRALVA 112          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C03_ORYSJ (Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 62/140 (44.29%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  233 LVPLATLIGRELRNEKI---------------------------EKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTS----------FSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            LVPLA LI  E R E+                             +P ++YG AA +KKGED+FL++ DC R   ++S+S          F+VFA+ DGHNG +AAI+T+++LLN+VLSA+P+G SR+EWL ALPRALVA
Sbjct:   32 LVPLAALIKEEARAERPMGSGSRICARDEEDGGGGGGAEGGRRWRRPLLRYGCAAQSKKGEDFFLLRTDCARPSTSSSSSSSLASSPPHTFAVFAVLDGHNGNAAAIYTRDNLLNHVLSAMPRGLSREEWLHALPRALVA 171          
BLAST of CF504333 vs. ExPASy Swiss-Prot
Match: P2C40_ORYSJ (Probable protein phosphatase 2C 40 OS=Oryza sativa subsp. japonica GN=Os04g0449400 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  275 EKIEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNASTSFSVFAIFDGHNGVSAAIFTKESLLNNVLSAIPQGASRDEWLQALPRALVA 541
            E+  +P V  GQA  AKKGED+ L+KP C+R+P   +  FS FA+FDGHNG  AA++ KE++L+NV+  +P   S DEWL ALPRALVA
Sbjct:   53 ERERRPSVAAGQACRAKKGEDFALLKPACERLPAGGAP-FSAFALFDGHNGSGAAVYAKENILSNVMCCVPADLSGDEWLAALPRALVA 140          
The following BLAST results are available for this feature:
BLAST of CF504333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
P2C05_ARATH1.390e-4577.39Probable protein phosphatase 2C 5 OS=Arabidopsis t... [more]
P2C33_ORYSJ1.645e-3869.52Probable protein phosphatase 2C 33 OS=Oryza sativa... [more]
P2C15_ARATH8.451e-3566.02Probable protein phosphatase 2C 15 OS=Arabidopsis ... [more]
P2C12_ARATH4.799e-3060.78Probable protein phosphatase 2C 12 OS=Arabidopsis ... [more]
P2C15_ORYSJ2.633e-2857.01Probable protein phosphatase 2C 15 OS=Oryza sativa... [more]
P2C69_ORYSJ3.802e-2756.60Probable protein phosphatase 2C 69 OS=Oryza sativa... [more]
P2C03_ORYSJ3.331e-2344.29Probable protein phosphatase 2C 3 OS=Oryza sativa ... [more]
P2C40_ORYSJ6.282e-2255.06Probable protein phosphatase 2C 40 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-822 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504333 ID=CF504333; Name=CF504333; organism=Citrus sinensis; type=EST; length=542bp
ATCAAATCACGCCACAGTTACCCTGGTTACTCTTTCTCTCACTAAAAAGT
TCACTTTCTTTCTCTTAGGGTTTTATTTTGGTGCAAAAATTGTGTATGAA
GTGACCGTTTTGGGGGCAAATGAGGAGAGTTTTGTAGACTGAATGCTCAA
TGGTGTTCTGAGAAAACGACTTGGAGATGTTGAAAATTAAACAAGCATGA
ACCAGACTGAAGTACCCCAGATGAAGGCTCCTCTTGTTCCGCTTGCAACT
TTGATCGGTCGTGAGCTGAGGAACGAAAAGATTGAGAAACCTTTTGTGAA
GTATGGACAGGCTGCATTAGCTAAGAAAGGAGAGGATTACTTTCTGATAA
AACCCGATTGCCAGAGGATTCCTGGAAATGCATCAACGTCATTTTCTGTT
TTTGCGATTTTTGATGGGCACAATGGTGTATCAGCTGCCATCTTTACAAA
GGAGAGCTTATTGAATAATGTCTTGAGTGCAATCCCTCAAGGCGCTAGTA
GGGATGAGTGGCTTCAAGCACTTCCTCGGGCACTTGTCGCAG
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