CF504334

Overview
NameCF504334
Unique NameCF504334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10200 contig Csv1_Contig10200:1226..1626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 2.663e-69
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            +Y DILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VASLLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ AMNHTDFIITSTFQEIAGSK+T
Sbjct:  360 EYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKET 492          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 3.846e-68
Identity = 120/133 (90.23%), Postives = 129/133 (96.99%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++S ILRVPFRTEKG+VRKWISRFEVWPYLETYTEDVA E+AKELQGKPDLI+GNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYP+SDIYWK L+++YHFSCQFTADL AMNHTDFIITSTFQEIAGSKDT
Sbjct:  358 EHSHILRVPFRTEKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDT 490          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.461e-67
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++S ILRVPFRTE G+VRKWISRFEVWPYLETYTEDVA E+AKELQGKPDLI+GNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYP+SDIYWK L+++YHFSCQFTADL AMNHTDFIITSTFQEIAGSKDT
Sbjct:  358 EHSHILRVPFRTENGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDT 490          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 1.237e-66
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            +++DILRVPFRTEKG+VR+WISRFEVWPYLETYTEDV VE+ KELQGKPDLIIGNYSDGNIVASLLAHK GVTQCT AHALEKTKYP+SDIYWK +D+KYHFS QFTADLIAMNHTDFIITSTFQEIAGSKDT
Sbjct:  356 EHADILRVPFRTEKGIVRQWISRFEVWPYLETYTEDVGVELIKELQGKPDLIIGNYSDGNIVASLLAHKFGVTQCTHAHALEKTKYPESDIYWKKMDEKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDT 488          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.110e-66
Identity = 117/133 (87.97%), Postives = 126/133 (94.74%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++  ILRVPFR +KG+VRKWISRFEVWPYLETYTEDVA E+AKELQGKPDLI+GNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYP+SDIYWK  ++KYHFSCQFTADL AMNHTDFIITSTFQEIAGSKDT
Sbjct:  358 EHCHILRVPFRDQKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDT 490          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.786e-65
Identity = 116/132 (87.88%), Postives = 124/132 (93.94%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKD 397
            ++  ILRVPFR EKG+VRKWISRFEVWPYLETYTEDVA E+AKELQ KPDLI+GNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYP+SDIYWK  ++KYHFSCQFTADL AMNHTDFIITSTFQEIAGSKD
Sbjct:  358 EHCHILRVPFRDEKGIVRKWISRFEVWPYLETYTEDVAHELAKELQSKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKD 489          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.975e-64
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++S ILRVPFRTEKG+VRKWISRFEVWPY+ET+ EDVA EI+ ELQ KPDLIIGNYS+GN+ ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWK  D+KYHFS QFTADLIAMNHTDFIITSTFQEIAGSKDT
Sbjct:  358 EHSHILRVPFRTEKGIVRKWISRFEVWPYMETFIEDVAKEISAELQAKPDLIIGNYSEGNLAASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDEKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDT 490          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 2.579e-64
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            +++ ILRVPFRTEKG++RKWISRFEVWPY+ET+TEDVA EIA ELQ KPDLIIGNYS+GN+VASLLAHKLGVTQCTIAHALEKTKYPDSDIYW+  D KYHFS QFTADLIAMNHTDFIITSTFQEIAGSKDT
Sbjct:  360 EHAHILRVPFRTEKGILRKWISRFEVWPYIETFTEDVAKEIALELQAKPDLIIGNYSEGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWEKFDKKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDT 492          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.280e-63
Identity = 114/133 (85.71%), Postives = 123/133 (92.48%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++S ILRVPF TEKG+VRKWISRFEVWPY+ET+ EDVA EI+ ELQ KPDLIIGNYS+GN+ ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWK  D+KYHFS QFTADLIAMNHTDFIITSTFQEIAGSKDT
Sbjct:  358 EHSHILRVPFGTEKGIVRKWISRFEVWPYMETFIEDVAKEISAELQAKPDLIIGNYSEGNLAASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDEKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDT 490          
BLAST of CF504334 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.184e-63
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 2
Query:    2 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT 400
            ++S ILRVPFRTEKG++RKWISRFEVWPY+ET+TEDVA EIA EL+ KPDLIIGNYS+GN+VASLLA+KLGVTQCTIAHALEKTKYPDSDIYW+  D KYHFS QFTADLIAMNHTDFIITSTFQEIAGSKDT
Sbjct:  354 EHSHILRVPFRTEKGILRKWISRFEVWPYMETFTEDVAKEIALELKAKPDLIIGNYSEGNLVASLLANKLGVTQCTIAHALEKTKYPDSDIYWEKFDKKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDT 486          
The following BLAST results are available for this feature:
BLAST of CF504334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS1_ARATH2.663e-6990.98Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUSY_SOYBN3.846e-6890.23Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_PHAAU1.461e-6789.47Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUSY_ALNGL1.237e-6688.72Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUSY_VICFA2.110e-6687.97Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_MEDSA1.786e-6587.88Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUS1_SOLTU1.975e-6486.47Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS1_DAUCA2.579e-6486.47Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_SOLLC1.280e-6385.71Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_DAUCA2.184e-6385.71Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-823 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504334 ID=CF504334; Name=CF504334; organism=Citrus sinensis; type=EST; length=401bp
TAAGTATTCAGATATACTTCGAGTTCCCTTTAGAACTGAGAAGGGAGTTG
TCCGCAAGTGGATCTCACGATTTGAAGTCTGGCCTTATCTAGAGACCTAC
ACGGAGGATGTTGCTGTTGAAATTGCCAAGGAGTTGCAGGGCAAGCCTGA
TCTAATCATTGGAAACTACAGTGATGGCAACATTGTTGCTTCCTTGTTAG
CACATAAACTAGGTGTTACCCAGTGTACTATTGCTCATGCTTTGGAGAAA
ACAAAATATCCAGATTCTGACATTTACTGGAAAAATTTGGATGACAAATA
CCACTTCTCATGCCAATTTACAGCTGATCTTATAGCCATGAATCACACTG
ACTTCATCATCACCAGTACCTTCCAAGAGATTGCTGGAAGTAAGGACACT
G
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