CF504337

Overview
NameCF504337
Unique NameCF504337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9975 contig Csv1_Contig9975:385..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.649e-74
Identity = 139/150 (92.67%), Postives = 147/150 (98.00%), Query Frame = 2
Query:    2 TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 451
            TYWESAAR+IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV QV+++VGT
Sbjct:  104 TYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGT 253          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.214e-72
Identity = 136/150 (90.67%), Postives = 146/150 (97.33%), Query Frame = 2
Query:    2 TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 451
            TYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA+V+QV++AVGT
Sbjct:  104 TYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGT 253          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 6.752e-70
Identity = 133/150 (88.67%), Postives = 144/150 (96.00%), Query Frame = 2
Query:    2 TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 451
            TYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRETPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+TGA+V+QV++AVGT
Sbjct:  104 TYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGT 253          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.279e-52
Identity = 105/149 (70.47%), Postives = 126/149 (84.56%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y ESAAR+IA++++S+KIVVEKSTVPV+ AE+I  IL  N K GI + ILSNPEFLAEGTAI DL N DRVLIGG ETPEG +AV+ L  +Y HW+P+  ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEATGA+VS+VA AVG
Sbjct:  104 YVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVG 252          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.020e-51
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQKAV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G
Sbjct:  108 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIG 256          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.042e-50
Identity = 102/150 (68.00%), Postives = 123/150 (82.00%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 451
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++PEGQKAV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+GT
Sbjct:  108 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGT 257          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.667e-50
Identity = 102/149 (68.46%), Postives = 121/149 (81.21%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G
Sbjct:  108 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIG 256          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.667e-50
Identity = 102/149 (68.46%), Postives = 121/149 (81.21%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G
Sbjct:  108 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIG 256          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.550e-50
Identity = 101/149 (67.79%), Postives = 122/149 (81.88%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCE+TGA+V +VA A+G
Sbjct:  108 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIG 256          
BLAST of CF504337 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.014e-49
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 2
Query:    5 YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 448
            Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATGA+V +VA A+G
Sbjct:  108 YIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIG 256          
The following BLAST results are available for this feature:
BLAST of CF504337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UGDH_SOYBN2.649e-7492.67UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH7.214e-7290.67Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH6.752e-7088.67Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME1.279e-5270.47UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_MOUSE7.020e-5169.13UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_CHICK2.042e-5068.00UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_PONAB2.667e-5068.46UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN2.667e-5068.46UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT4.550e-5067.79UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_BOVIN1.014e-4967.79UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-826 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504337 ID=CF504337; Name=CF504337; organism=Citrus sinensis; type=EST; length=453bp
GACATACTGGGAGAGCGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTG
ACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCA
ATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCT
TTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTA
ACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAA
GCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCG
AATTTTGACCACCAACCTCTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCA
ATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTC
TGCGAGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTAC
AGA
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