CF504339

Overview
NameCF504339
Unique NameCF504339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12454 contig Csv1_Contig12454:12..435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504339 vs. ExPASy Swiss-Prot
Match: Y3136_ARATH (Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.271e-25
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  116 IEIKIPQQRNYNNINNSCPFPSVLSPN----PATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTA 424
            +E  IPQQ++Y     S PFP+V+SP     P    ++    + ++TQK +LDSLL ++G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTA
Sbjct:    7 VETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTA 108          
The following BLAST results are available for this feature:
BLAST of CF504339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3136_ARATH9.271e-2555.14Clavaminate synthase-like protein At3g21360 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-828 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504339 ID=CF504339; Name=CF504339; organism=Citrus sinensis; type=EST; length=424bp
AACAGCACGACATCAACAAGAAACGGCAGCGTCAGCACCAACTCTTGTCT
CTTTGATCACCTTGAAACTCCGCAGCACTGCAAACAAAAAAACCATCGGC
ATGGCAGATCATTTCATAGAAATCAAAATCCCACAACAAAGAAACTACAA
CAACATCAACAATTCCTGTCCTTTCCCTTCAGTTCTCTCTCCAAACCCAG
CAACAACGGCAACAGTTTCTCGTTTGGCTGAAAAAGTCAGAACCCAGAAG
CCGTTTCTCGACTCTTTGTTGCTGAAAGCAGGATCAGTTCTTTTCAGGGG
ATTTGATGATGTGAAGACAGCCAAAGAATTCAACGACGTCGTTGAGGCTT
TTGGTTACGAGGAGCTGCCTTATGTGGGCGGTGCGGCTCCCAGAACCAAC
ATTGTTGGTAGGGTTTTTACGGCC
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