CF504346

Overview
NameCF504346
Unique NameCF504346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12604 contig Csv1_Contig12604:28..305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P+DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM
Sbjct:   72 PADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.556e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.556e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1A_RAT (Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1A_MOUSE (Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1A_HUMAN (Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1A_CRIGR (Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTY +VG C+DE TH FKG TVM
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYPIVGVCSDELTHNFKGFTVM 127          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.393e-17
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  119 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTV 274
            RPVR+YADGIYDLFH GHA  L Q KK FPN YL+VG C D  THK+KG+TV
Sbjct:   79 RPVRIYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTV 130          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.330e-17
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P  RPVRVYADG++DLFH GH R LEQAKK FPN +L+VG  ND+ TH+ KG TVM
Sbjct:   97 PEGRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVM 152          
BLAST of CF504346 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.512e-16
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 277
            P+DRP+R+YADG++DLFH GH + LEQ KK+FPN  L+VG  +D+ THK KG TV+
Sbjct:   99 PTDRPIRIYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGLTVL 154          
The following BLAST results are available for this feature:
BLAST of CF504346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PCY1B_HUMAN1.148e-1976.79Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
PCY1B_RAT2.556e-1976.79Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE2.556e-1976.79Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1A_RAT4.361e-1975.00Choline-phosphate cytidylyltransferase A OS=Rattus... [more]
PCY1A_MOUSE4.361e-1975.00Choline-phosphate cytidylyltransferase A OS=Mus mu... [more]
PCY1A_HUMAN4.361e-1975.00Choline-phosphate cytidylyltransferase A OS=Homo s... [more]
PCY1A_CRIGR2.826e-1873.21Choline-phosphate cytidylyltransferase A OS=Cricet... [more]
PCY1_CAEEL2.393e-1771.15Putative choline-phosphate cytidylyltransferase OS... [more]
PCY1_SCHPO5.330e-1767.86Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1_YEAST4.512e-1660.71Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-835 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504346 ID=CF504346; Name=CF504346; organism=Citrus sinensis; type=EST; length=278bp
GTTACTAAAATGAAATGAGAGAACTCTTCGAATCGAGGAGAACGCCAATA
ACAGCAGCGAAAAAATGAGTAACGCAAATTCGAATAATTCAAATTCGACT
GATACGGCGCCGTCTGATCGCCCCGTTAGAGTCTACGCCGATGGGATCTA
CGATCTTTTCCATTTCGGCCACGCTCGCTCCCTTGAACAAGCCAAGAAAT
CGTTTCCAAACACCTACCTCCTTGTCGGATGCTGCAATGATGAAACTACT
CATAAGTTTAAGGGCAAAACTGTTATGA
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