CF504349

Overview
NameCF504349
Unique NameCF504349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11641 contig Csv1_Contig11641:48..311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.739e-21
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 3
Query:   90 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 263
            E YI VP+ F+CPISLDVM+SPVSLCTGVTYDR+SIQ WL+ G++TCPATMQ+L TK+
Sbjct:    7 ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKD 64          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.190e-21
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   78 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 263
            M + +L I VP  FRCPISLDVMKSPVSLCTGVTYDR+SIQ WL+ G++TCPATMQIL  K+
Sbjct:    1 MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.201e-18
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   78 MVRQELYIA-VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 263
            M   +LYI  VP  F+CPISLDVMKSPVSL TGVTYDR SIQ WL+ G++TCPATMQIL  KE
Sbjct:    1 MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKE 63          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   69 RKKMVRQEL---YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 251
            RK  V QE+   +I VP  F CPISLD+M  PV + TG TYDR+SI  W+E GH TCP T Q+L
Sbjct:  290 RKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQML 353          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 3
Query:   87 QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 263
            +E+ I +P+ F+CPIS ++MK PV + +G+TYDR +I+ W ESG+ TCP T  +L++ E
Sbjct:   27 EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLE 85          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   99 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 257
            I +P+ FRCPISL++MK PV + TG TY+R+ I+ W+ SGH TCP T Q +ST
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMST 323          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   99 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 257
            I +P+ FRCPISL++MK PV + TG TY+R+ I+ W+ SGH TCP T Q +ST
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMST 323          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   90 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 257
            E  I +P  F+CPIS+D+MK PV + TG+TYDR SI+ W+ SG+ TCP T  +L+T
Sbjct:   26 ESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTT 81          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.079e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  105 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 251
            +P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L
Sbjct:  248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 296          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB31_ARATH (U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.252e-12
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:   72 KKMVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 251
            K+M+ +     +P++F CPISL+ M+ PV+LCTG TY+RS+I  W   GH TCP TMQ L
Sbjct:   49 KEMISELELPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQEL 108          
The following BLAST results are available for this feature:
BLAST of CF504349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PUB29_ARATH4.739e-2174.14U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB27_ARATH6.190e-2172.58U-box domain-containing protein 27 OS=Arabidopsis ... [more]
PUB28_ARATH2.201e-1871.43U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB17_ARATH8.103e-1356.25U-box domain-containing protein 17 OS=Arabidopsis ... [more]
PUB20_ARATH1.058e-1247.46U-box domain-containing protein 20 OS=Arabidopsis ... [more]
SL11_ORYSJ1.382e-1256.60Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI1.382e-1256.60Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB21_ARATH2.358e-1253.57U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB14_ARATH3.079e-1259.18U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB31_ARATH5.252e-1251.67U-box domain-containing protein 31 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-838 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504349 ID=CF504349; Name=CF504349; organism=Citrus sinensis; type=EST; length=264bp
CTAGTTCTCTCTCTGAAATCATCTGTTTCTATCTGTAGAGAAGCCAAACC
CAAACAAAGAATTAAAAGAGAAAAAAAATGGTGAGACAAGAACTTTACAT
AGCAGTACCGAATTTATTCCGGTGCCCGATTTCCTTGGACGTAATGAAGT
CTCCGGTGAGTCTCTGCACAGGTGTCACCTACGATCGCTCCAGCATCCAG
CACTGGCTCGAATCCGGCCACGACACTTGCCCCGCCACCATGCAAATCCT
GTCCACTAAGGAAT
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