CF504352

Overview
NameCF504352
Unique NameCF504352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1380 contig Csv1_Contig1380:162..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504352 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.203e-18
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 3 
Query:    3 FFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL---------MPVAAECKEVLPASSGGVGDFAMNKVSF-AGGSAAGSTPSWHMDDFLALPELNQNY 389
            FFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KVGLE  D G           +  ++ K    S  +                + + V+P +   V D    K+   + GS  GS P W +++   L + +Q+Y
Sbjct:   67 FFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTG-PSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTK--VNDQTSTKLPLVSSGSTTGSIPQWQIEEIFGLTDFDQSY 202
The following BLAST results are available for this feature:
BLAST of CF504352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STHY_ARATH2.203e-1839.57Probable salt tolerance-like protein At1g78600 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-841 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504352 ID=CF504352; Name=CF504352; organism=Citrus sinensis; type=EST; length=404bp
TTTTCTTTTGTCTACAAGATCGAGCCTTACTCTGCAGGAAATGTGATGTT
GCCATACACACAGCGAATAGCTATGTGTCTGCTCATCAGAGATTTTTGCT
TACTGGAGTAAAAGTAGGTCTTGAACCAGCTGATCCTGGTGCTTCATCTT
CCTCTATTAAGTCACTATCTGGGGAAAACATTTTGGACATGAAATCCCAT
TCCCTGTCTAGAAGGGACGCCCTGATGCCAGTGGCTGCTGAATGCAAAGA
AGTTTTACCTGCTAGTTCTGGTGGAGTTGGCGACTTTGCAATGAACAAAG
TCTCATTTGCTGGGGGGTCTGCAGCTGGAAGCACTCCGTCGTGGCACATG
GATGATTTTCTAGCACTTCCTGAGCTCAATCAAAATTATAGCTTATGGAT
AATG
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