CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.891e-23
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  122 VEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF 316
            +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG +AKF
Sbjct:    1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKF 65          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.072e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  107 MVKHVVEKPAER----CDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF 316
            MVK  +++  ++      S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAFDAA FCLRG  A F
Sbjct:    1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANF 74          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF 316
            +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+F
Sbjct:    6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARF 60          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF 316
            Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVY 80          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   53 IQHHSSKSRIPIT*NPLKMVKHVVEKPAERCDSR--------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            IQ  S+K  +P++ +P           +  C ++        YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A
Sbjct:    8 IQTSSTKKEMPLSSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQA 101          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.536e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+DAAL CL+G SA
Sbjct:   34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSA 86          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.620e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2
Query:  119 VVEKPAERC----DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            + EKP        + RYKG+R RKWGK+V+EIR PN R+RIWLGSY TA  AARA+D A+F LRG SA+
Sbjct:   20 MTEKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSAR 88          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.422e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  146 DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            D  YKG+R RKWGK+V+EIR PN R+RIWLGSY T E AARA+D A+F LRG SA+
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSAR 82          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.958e-16
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   47 NSIQHHSSKSRIPIT*NPLKMVKHVVEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +S+ H SS S    +    +  K+ ++K        YKGVR R WG +V+EIR PN + RIWLGSY TAE AARA+DAAL CL+G  A
Sbjct:   15 SSLSHSSSSSSSSTSALRHQSCKNKIKK--------YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKA 94          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  146 DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            D  YKG+R RKWGK+V+EIR PN R+R+WLGSY T E AARA+D A+F LRG +A+
Sbjct:   18 DRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAR 73          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ERF17_ARATH2.891e-2376.92Ethylene-responsive transcription factor ERF017 OS... [more]
ERF18_ARATH2.072e-2167.57Ethylene-responsive transcription factor ERF018 OS... [more]
ERF16_ARATH2.290e-2080.00Ethylene-responsive transcription factor ERF016 OS... [more]
ERF15_ARATH1.176e-1668.52Ethylene-responsive transcription factor ERF015 OS... [more]
ERF12_ARATH1.176e-1645.74Ethylene-responsive transcription factor ERF012 OS... [more]
ERF14_ARATH1.536e-1671.70Ethylene-responsive transcription factor ERF014 OS... [more]
RAP29_ARATH2.620e-1659.42Ethylene-responsive transcription factor RAP2-9 OS... [more]
RA210_ARATH3.422e-1667.86Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF13_ARATH9.958e-1648.86Ethylene-responsive transcription factor ERF013 OS... [more]
ERF10_ARATH1.699e-1564.29Ethylene-responsive transcription factor ERF010 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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