CF504357

Overview
NameCF504357
Unique NameCF504357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.927e-20
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   12 GEFPTASSE--SRRLLMACVSENSDDL------IRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            G+F    SE    R++ A  +E   DL      +++LV +L+S S++ Q+QA  E+RLLAK+  +NR+ I  +GA+  LV L+ S+D   QE  VTA+LNLS+ D NK+ IA +GAI+PL+  L+ G+S A
Sbjct:  510 GQFWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEA 640          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   66 SENSDDLIRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTG 368
            S + +  +++L+ DL+S S++ Q++A   IR+LA+N ++NR+ IA+  A+  LVSL+ S+D ++Q   VT +LNLS+ D NK LIA SGAI PL+  LKTG
Sbjct:  416 SSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTG 516          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   15 EFPTASSESRRLLMACVSENSDDLIRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            E P  S++  +   AC S    + I  L++ L S    +Q+ AA E+RLLAK  + NR+ IA+AGA+  L+SL+SSSD + QE+ VTA+LNLS+ ++NK  I SSGA+  +V  LK G+  A
Sbjct:  346 EPPKRSTQPNKPTPACSSSERAN-IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEA 466          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   15 EFPTASSESRRLLMACVSENSDDLIRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            E P  S++  +   AC S    + I  L++ L S    +Q+ AA E+RLLAK  + NR+ IA+AGA+  L+SL+SSSD + QE+ VTA+LNLS+ ++NK  I SSGA+  +V  LK G+  A
Sbjct:  346 EPPKRSTQPNKPTPACSSSERAN-IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEA 466          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.398e-18
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 3
Query:  129 DQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            DQ+ AA EIRLLAK  ++NR+ IA+AGA+  LV L+S+ D ++QE+ VTA+LNLS+C+ NK  I S+GAI  +V+ LK G+  A
Sbjct:  368 DQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEA 451          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   66 SENSDDL--IRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            ++NS D+  IR LV  L S S  D++ A  EIR L+K  ++NR+ IA+AGA+  LV+L++S D   QE  +T +LNLS+ + NK+LI  +GA+  +V+ L+ GT  A
Sbjct:  324 TKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEA 430          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.821e-16
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 3
Query:   93 QLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            +LV DL+S S   +  AA EIR L  N  ENR+ I + GA+ PL+SL+ S +   QE+ VTA+LNLS+ + NK +I   GAI+PLV  L TG   A
Sbjct:  476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRA 571          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.821e-16
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 3
Query:   87 IRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            +  L+  L + +   Q+ AA E+RLLAK   +NR+ IA+AGA+  LV L+SS DP+ QE+ VTA+LNLS+ + NK  I  +GAI  +V  LK G+  A
Sbjct:  347 VLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEA 444          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   87 IRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISS-SDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            IR LV  L S SI D++ A  EIR L+K  ++NR+ IA+AGA+  LV L++S  D + QE  VT ILNLS+ + NK+LI  +GA+  +V  L+ G+  A
Sbjct:  343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEA 441          
BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   69 ENSDDLIRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLIS-SSDPQVQEYGVTAILNLSLCDENK-QLIASSGAIKPLVRSLKTGTSTA 380
            ++  + I +L+  L S    D++ AA EIRLLAK  + NR+ IA +GA+  LV+L++ S+D + QE+ VT+ILNLS+C ENK +++ SSGA+  +V  L+ G+  A
Sbjct:  351 DDEHNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEA 456          
The following BLAST results are available for this feature:
BLAST of CF504357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PUB4_ARATH8.927e-2042.75U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB2_ARATH1.523e-1946.53U-box domain-containing protein 2 OS=Arabidopsis t... [more]
SL11_ORYSJ2.199e-1844.26Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI2.199e-1844.26Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB13_ARATH6.398e-1853.57U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB11_ARATH3.175e-1743.93U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB3_ARATH7.821e-1647.92U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB14_ARATH7.821e-1645.92U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB10_ARATH1.334e-1546.46U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB12_ARATH2.275e-1543.40U-box domain-containing protein 12 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-846 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504357 ID=CF504357; Name=CF504357; organism=Citrus sinensis; type=EST; length=380bp
GCGACAGATCCGGTGAATTTCCGACGGCGTCGTCCGAGAGCCGGAGACTT
TTAATGGCGTGTGTTTCGGAGAACTCCGATGATCTGATTCGCCAGCTCGT
TGCAGATCTTGAGTCCTGTTCGATTAACGATCAAAAACAAGCCGCCATGG
AAATCAGACTTTTGGCCAAGAACAAGTCAGAGAATCGCTTAAAAATCGCC
AAAGCAGGTGCTGTTAAGCCGTTAGTTTCGTTAATCTCATCGTCTGATCC
TCAGGTTCAAGAGTACGGAGTTACAGCTATTTTGAATCTGTCTCTGTGCG
ACGAGAACAAGCAATTGATAGCTTCATCAGGAGCGATAAAGCCGCTCGTT
AGATCATTAAAAACAGGTACATCAACGGCT
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