CF504360

Overview
NameCF504360
Unique NameCF504360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:21..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.803e-48
Identity = 92/98 (93.88%), Postives = 98/98 (100.00%), Query Frame = 1
Query:   76 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGL
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGL 98          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 9.264e-46
Identity = 87/98 (88.78%), Postives = 96/98 (97.96%), Query Frame = 1
Query:   76 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGL
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGL 98          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.273e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.175e-32
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.534e-32
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   76 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGL 98          
The following BLAST results are available for this feature:
BLAST of CF504360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH5.803e-4893.8840S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH9.264e-4688.7840S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT5.273e-3374.1940S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB5.273e-3374.1940S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE5.273e-3374.1940S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU5.273e-3374.1940S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN5.273e-3374.1940S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN5.273e-3374.1940S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA1.175e-3273.1240S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_DICDI1.534e-3265.3140S ribosomal protein S24 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-849 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504360 ID=CF504360; Name=CF504360; organism=Citrus sinensis; type=EST; length=369bp
CTCGCTTCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGAT
TCAGCAGACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTC
GAACTAGGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTT
ATTGATGTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAA
GGAGAAGTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTG
TTTTTAAGTTTCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGT
CTGATCTATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAG
GCTTATCAGGAATGGACTT
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