CF504362

Overview
NameCF504362
Unique NameCF504362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig537 contig Csv1_Contig537:1..370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504362 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 2 
Query:  161 VLSVLVCGFIELGLCR---EGNFIQMRPGGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQ 370
            ++++L+CG I+L +CR   +     M  GGV+D  GNQNS EIE LARFA+QEHNK++N +L+F +++KA+EQ
Sbjct:    8 IVTLLLCGTIQLAICRSEEKSTEKTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQ 80
[Close]
BLAST of CF504362 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:  164 LSVLVCGFI--ELGLCREGNFIQMRPGGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQ 370
            LS+ +   I  +LG C E   +    GGV D   NQNS E+E LARFAV EHNKKENALL+FARV+KAKEQ
Sbjct:   15 LSLFISSLIASDLGFCNEEMALV---GGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQ 82
The following BLAST results are available for this feature:
BLAST of CF504362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CYT3_ARATH3.796e-1550.68Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT6_ARATH1.221e-1359.15Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-851 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504362 ID=CF504362; Name=CF504362; organism=Citrus sinensis; type=EST; length=370bp
CCGCGATGCTGTAACTAACTTACCCGTTAAGTTTGAGGCATCGACACCCC
ATTAAGTTCAATTGGAAAATTCGTCATCTGGAAACCCGAGCGTTCGATCG
TGTTGGATACGGAAGCAAAGATTTAGATACACAGTGAAGATGAATCGATA
CTCTGTGATAGTTTTGAGCGTTTTGGTTTGTGGGTTTATTGAATTGGGAC
TTTGCAGAGAAGGTAACTTCATTCAGATGAGACCCGGAGGCGTTTATGAT
TACGGGGGCAATCAAAACAGTGCTGAGATCGAAGGCCTTGCCCGTTTCGC
CGTTCAAGAACACAACAAGAAAGAGAATGCCCTTCTTCAGTTTGCAAGGG
TGTTGAAGGCCAAGGAACAG
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