CF504375

Overview
NameCF504375
Unique NameCF504375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 7.770e-48
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  TTLTMKAMGIN+LLSFDF+DPP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT+IAMIQTG+IF RPREKQA+AD+
Sbjct:  874 NLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQ 980          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.854e-41
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL +T LTMKAMGIN+LL+FDF+DPP  Q L+SAMEQLYSLGALDEEGLLT+LG+KMAEFPLDP LSKML+ASVDLGCSDEILT++AM+   ++F RP+EKQA AD+
Sbjct:  867 NLGNTVLTMKAMGINDLLNFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNVFYRPKEKQALADQ 973          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.287e-34
Identity = 68/107 (63.55%), Postives = 91/107 (85.05%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  T L++KAMGIN+LLSFDF+D P  + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+   ++F RP++KQA AD+
Sbjct:  948 NLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQ 1054          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.287e-34
Identity = 68/107 (63.55%), Postives = 91/107 (85.05%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  T L++KAMGIN+LLSFDF+D P  + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+   ++F RP++KQA AD+
Sbjct:  924 NLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQ 1030          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.744e-34
Identity = 66/106 (62.26%), Postives = 91/106 (85.85%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL HT L +KAMGIN+LL+FDF+DPP  Q +I+A++ LY+L ALD+EGLLT LG+KMA+FP++P LSK+L+ SV+LGCS+E+L+IIAM+   +I++RPREKQ +AD
Sbjct:  870 NLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRPREKQQEAD 975          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.977e-32
Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  T L +KAMGINNL+ FDF+D P   ++I+A+  L++L ALD +GLLTKLG++MAEFPL+P LSK+L+ SVDLGCS+E+LTI+AM+   +IF RP+EKQ  AD+
Sbjct:  899 NLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQ 1005          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.594e-30
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319
            NL +  L +K+MGIN+L++FDF+DPP  Q LI+A+EQLY+LGAL++ G LTKLG+KMAEFP+DP LSKM++AS    CS+EILTI AM+  G+ IF RP++K   AD
Sbjct:  826 NLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAAD 932          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL HT L +KAMGIN+LL FDF+DPP    +++A+ +LY L +LD+EG LT LGK+M+ FP+DP LS+ LL+SVD  CSDEI+TII+M+   ++F RP+++Q +AD
Sbjct:  842 NLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNVFYRPKDRQLEAD 947          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.800e-28
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL +T LT+K +GI++L+ FDF+DPP+P+ L+ A+E L  LGALD+EG LTK G+ M+EFPLDP +SKML+ S +  CS+EIL++ AM+   + F RPRE Q  ADE
Sbjct:  437 NLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADE 543          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.752e-26
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL +  L +K++G+++LL F F+D P    ++++M QL++LGALD  G LT +G+KM EFPLDP LSKML+ S ++GCSDE+LTI++M+    IF RP+ ++ +AD
Sbjct:  800 NLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIFFRPKGREEEAD 905          
The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DHX8_ARATH7.770e-4888.79Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI1.854e-4175.70ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_MOUSE1.287e-3463.55ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN1.287e-3463.55ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
PRP22_SCHPO3.744e-3462.26Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG5_CAEEL5.977e-3259.81Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_DICDI5.594e-3059.81Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST3.626e-2955.66Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_ARATH1.800e-2855.14Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
MOG1_CAEEL3.752e-2649.06Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-864 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bp
TAATCTTGTACATACTACCCTCACTATGAAGGCTATGGGAATCAATAATC
TGCTGTCTTTTGATTTTGTGGATCCTCCATCTCCCCAAGCTCTTATTTCT
GCCATGGAGCAATTATACAGTCTTGGAGCTCTGGATGAGGAGGGACTTCT
GACTAAATTAGGTAAGAAAATGGCAGAATTTCCCCTAGATCCGCCATTAT
CAAAGATGCTGCTAGCAAGTGTAGACCTTGGTTGCAGTGATGAGATATTA
ACGATCATCGCCATGATTCAAACTGGCCATATCTTCACCAGACCCAGGGA
AAAACAGGCTAAAGCAGATGAAAA
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