CF504377

Overview
NameCF504377
Unique NameCF504377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8046 contig Csv1_Contig8046:46..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504377 vs. ExPASy Swiss-Prot
Match: YQL5_SCHPO (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe GN=SPCC1827.05c PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.570e-16
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 2 
Query:  179 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 355
            +K++E K L  K  VLY+GR+PHGFYEK+M+ +FSQFG + RLR++RN+KTG SKH+ F
Sbjct:   92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAF 150
[Close]
BLAST of CF504377 vs. ExPASy Swiss-Prot
Match: NOP15_YEAST (Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae GN=NOP15 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 29/59 (49.15%), Postives = 46/59 (77.97%), Query Frame = 2 
Query:  179 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 355
            +K  ++K L   + ++Y+ R+PHGF+EKE+  +F+QFG +K +R+ARNKKTG S+H+GF
Sbjct:   78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGF 136
The following BLAST results are available for this feature:
BLAST of CF504377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YQL5_SCHPO4.570e-1659.32Uncharacterized RNA-binding protein C1827.05c OS=S... [more]
NOP15_YEAST1.625e-1349.15Ribosome biogenesis protein 15 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-866 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504377 ID=CF504377; Name=CF504377; organism=Citrus sinensis; type=EST; length=357bp
ATTTTCTCTCGAGACACAGCAGGGGCTCACAGCAAGCTTCTGAGTAACAA
AAAGTGAGATGGGGGCCAAGCAAAAGAAAGCATTGAAGAAGAATTTGAAG
AAAGTTTCTTCACAGTTACCAGTTCCCAGTGATAAAAAAGGCGCCGCCGA
TTTCTTGCCGCTGGAAGGTGGGCCTGGGCGAAAACTTACTGAGGAGAAGC
CACTAGTAAATAAAGCTACAGTGTTATACATTGGCCGGATTCCACATGGG
TTCTATGAGAAGGAAATGCAAGCTTTCTTTAGCCAATTTGGTGCAATCAA
GAGGCTAAGAATTGCGCGGAATAAAAAGACTGGACAGTCAAAGCATTTTG
GGTTCAT
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