CF504380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: RRP45_SCHPO (Exosome complex component rrp45 OS=Schizosaccharomyces pombe GN=rrp45 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2 Query: 119 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 ++N K F+ +L G+R+DGR ++R L I+FG+E G +V G T +M +T ++ +PY DRP +G SI TE +P+A +FE Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFE 92
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: RRP45_YEAST (Exosome complex component RRP45 OS=Saccharomyces cerevisiae GN=RRP45 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 98 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 +A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + ++ Q+ QPY DRP EG I TE SPMA FE Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFE 92
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_BOVIN (Exosome complex exonuclease RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_RAT (Exosome complex exonuclease RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_MOUSE (Exosome complex exonuclease RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_HUMAN (Exosome complex exonuclease RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91 The following BLAST results are available for this feature:
BLAST of CF504380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504380 ID=CF504380; Name=CF504380; organism=Citrus sinensis; type=EST; length=377bpback to top |