CF504380

Overview
NameCF504380
Unique NameCF504380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: RRP45_SCHPO (Exosome complex component rrp45 OS=Schizosaccharomyces pombe GN=rrp45 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  119 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            ++N K F+  +L  G+R+DGR   ++R L I+FG+E G  +V  G T +M  +T ++ +PY DRP +G  SI TE +P+A  +FE
Sbjct:    8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFE 92          
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: RRP45_YEAST (Exosome complex component RRP45 OS=Saccharomyces cerevisiae GN=RRP45 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   98 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            +A    ++ +E +FI  AL    R+DGR+  ++R + I FG+E G   V++G T +   ++ Q+ QPY DRP EG   I TE SPMA   FE
Sbjct:    1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFE 92          
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_BOVIN (Exosome complex exonuclease RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91          
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_RAT (Exosome complex exonuclease RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91          
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_MOUSE (Exosome complex exonuclease RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91          
BLAST of CF504380 vs. ExPASy Swiss-Prot
Match: EXOS9_HUMAN (Exosome complex exonuclease RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 373
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFE 91          
The following BLAST results are available for this feature:
BLAST of CF504380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RRP45_SCHPO3.896e-1541.18Exosome complex component rrp45 OS=Schizosaccharom... [more]
RRP45_YEAST3.647e-1340.22Exosome complex component RRP45 OS=Saccharomyces c... [more]
EXOS9_BOVIN1.173e-1141.46Exosome complex exonuclease RRP45 OS=Bos taurus GN... [more]
EXOS9_RAT1.532e-1141.46Exosome complex exonuclease RRP45 OS=Rattus norveg... [more]
EXOS9_MOUSE1.532e-1141.46Exosome complex exonuclease RRP45 OS=Mus musculus ... [more]
EXOS9_HUMAN1.532e-1141.46Exosome complex exonuclease RRP45 OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504380 ID=CF504380; Name=CF504380; organism=Citrus sinensis; type=EST; length=377bp
GTCACTGTTCACTTTTTCATGCTTTGATTGATTGCCCAGAAGTTTAGACA
GCGGAAAAGTTGCGTGTAAAGAAGCGAGACAACAAATGGATACGAGATTA
GCAAATACGTGGAGGTTGACTGTGAATGAGAAGAGATTTATAGAGACTGC
GCTTAGTTCTGGTATCAGAATCGATGGTCGCAACCCTTTTGAATATCGTA
AACTATCCATCAAGTTTGGCAGGGAAGATGGTTCATCAGAAGTTCAGCTA
GGTCAGACTCATATAATGGGTTTTGTAACCGGCCAACTGGTTCAACCTTA
TCGGGACCGACCTAATGAAGGGACATTGTCAATCTTTACTGAATTCTCTC
CAATGGCTGATCCTTCATTTGAGACAG
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