CF504384

Overview
NameCF504384
Unique NameCF504384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5800 contig Csv1_Contig5800:198..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504384 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:  167 QWELFVNGIGQGIMIQLISEDIDPVTNSG-KSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILIT 385
            Q ELF+  IGQG++IQL+SE+IDP T  G KS+ES V G LPK V      +F   A+F VP +FG PGAIL+T
Sbjct:  103 QLELFMKAIGQGMLIQLVSEEIDPETGKGRKSLESPVMG-LPKAVKDPRYLVF--TADFTVPINFGKPGAILVT 173
The following BLAST results are available for this feature:
BLAST of CF504384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LOX6_ARATH3.052e-1255.41Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-873 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504384 ID=CF504384; Name=CF504384; organism=Citrus sinensis; type=EST; length=387bp
TCAAAACAAAGCTACAGAGGCTGCTACGAAGTCAGTGGACGCAAAAGACG
TTAACGGGTCGTTATTGGTTAGTAGCTCGAGTTCAAAAGAAGGGTTAGTT
GATGTGAGAGCAGTGATCACGATAAGGAAGAAGTTGAAAGAAAAGCTCAC
TGAAAAGATTGAGGATCAATGGGAGCTTTTTGTAAATGGGATTGGACAAG
GAATCATGATTCAGCTTATAAGTGAAGACATTGATCCTGTTACCAACTCA
GGGAAGAGTGTAGAATCTGCAGTGAGGGGCTGGTTGCCGAAACCGGTAAC
TTCAAGCAATGTCAACATTTTTCAATATGAGGCTAATTTCGGTGTCCCAT
CTGATTTTGGTAACCCAGGGGCTATTCTCATTACTAA
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