CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ARATH (Valyl-tRNA synthetase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.910e-37
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY+WWE S  F AD KSSKP FVIVLPPPNVTGALHIGHALT+AI+DTIIRW+RMSGYNALWVPG+DHAGIATQVVVEKK+
Sbjct:  149 WYAWWEKSDLFKADAKSSKPPFVIVLPPPNVTGALHIGHALTSAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKI 229          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BDEBA (Valyl-tRNA synthetase OS=Bdellovibrio bacteriovorus GN=valS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.035e-28
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WWE +GYF A ++S+KP F I+LPPPNVTG LH+GHAL   IQD +IRW+RM+GYN +W+PG DHAGIATQ VVE++L
Sbjct:   21 YEWWEKNGYFKAQDQSTKPPFSIILPPPNVTGFLHMGHALDHTIQDMMIRWKRMNGYNTMWLPGTDHAGIATQSVVEREL 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_GEOSL (Valyl-tRNA synthetase OS=Geobacter sulfurreducens GN=valS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.145e-27
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE  GYF A+  S KPS+ IV+PPPNVTGALH+GHAL   +QD + RW+RM+GY  LW+PG DHAGIATQ VVE++L
Sbjct:   19 WYETWEQEGYFRANPDSGKPSYSIVIPPPNVTGALHMGHALNNTLQDILCRWKRMNGYEVLWMPGTDHAGIATQNVVERQL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NEUCR (Valyl-tRNA synthetase, mitochondrial OS=Neurospora crassa GN=cyt-20 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.953e-27
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 WYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WWE +GYF  ++  K S   FVI LPPPNVTGALH GHAL  ++QDT+IRW RM GY  LWVPG DHAGI+TQ VVEK L
Sbjct:  149 WYQWWEKAGYFKPESCRKPSAGKFVIPLPPPNVTGALHCGHALANSLQDTLIRWYRMKGYETLWVPGCDHAGISTQSVVEKML 231          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PARUW (Valyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=valS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.653e-26
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W+   YF A+  S+KP++ IV+PPPNVTG LH+GHAL   +QD +IRW+RM G+  LWVPG DHAGIATQ+VVE+ L
Sbjct:   17 WYQFWDAKRYFTANPLSNKPTYCIVIPPPNVTGVLHMGHALVNTVQDILIRWKRMLGFETLWVPGTDHAGIATQMVVERHL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLTR (Valyl-tRNA synthetase OS=Chlamydia trachomatis GN=valS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.683e-26
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE SG F+A+  S KP++ IV+PPPNVTG LH+GHAL   +QDT+IR++RM G+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YSFWERSGMFVANASSEKPAYSIVMPPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLTB (Valyl-tRNA synthetase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=valS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.683e-26
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE SG F+A+  S KP++ IV+PPPNVTG LH+GHAL   +QDT+IR++RM G+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YSFWERSGMFVANASSEKPAYSIVMPPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLTA (Valyl-tRNA synthetase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=valS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.683e-26
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE SG F+A+  S KP++ IV+PPPNVTG LH+GHAL   +QDT+IR++RM G+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YSFWERSGIFVANASSEKPAYSIVMPPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLT2 (Valyl-tRNA synthetase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=valS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.683e-26
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE SG F+A+  S KP++ IV+PPPNVTG LH+GHAL   +QDT+IR++RM G+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YSFWERSGMFVANASSEKPAYSIVMPPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLMU (Valyl-tRNA synthetase OS=Chlamydia muridarum GN=valS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.683e-26
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE SG FIAD  S KP++ IV+PPPNVTG LH+GHAL   +QD +IR++RM G+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YSFWERSGMFIADANSKKPAYSIVMPPPNVTGILHMGHALVNTLQDMLIRYKRMKGFEVCWVPGTDHAGIATQTVVERHL 99          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_ARATH7.910e-3785.19Valyl-tRNA synthetase OS=Arabidopsis thaliana GN=V... [more]
SYV_BDEBA1.035e-2866.25Valyl-tRNA synthetase OS=Bdellovibrio bacteriovoru... [more]
SYV_GEOSL1.145e-2764.20Valyl-tRNA synthetase OS=Geobacter sulfurreducens ... [more]
SYV_NEUCR1.953e-2766.27Valyl-tRNA synthetase, mitochondrial OS=Neurospora... [more]
SYV_PARUW1.653e-2660.49Valyl-tRNA synthetase OS=Protochlamydia amoebophil... [more]
SYV_CHLTR3.683e-2662.50Valyl-tRNA synthetase OS=Chlamydia trachomatis GN=... [more]
SYV_CHLTB3.683e-2662.50Valyl-tRNA synthetase OS=Chlamydia trachomatis (st... [more]
SYV_CHLTA3.683e-2662.50Valyl-tRNA synthetase OS=Chlamydia trachomatis (st... [more]
SYV_CHLT23.683e-2662.50Valyl-tRNA synthetase OS=Chlamydia trachomatis (st... [more]
SYV_CHLMU3.683e-2663.75Valyl-tRNA synthetase OS=Chlamydia muridarum GN=va... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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