CF504395

Overview
NameCF504395
Unique NameCF504395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11166 contig Csv1_Contig11166:367..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504395 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.559e-59
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 3 
Query:    3 SAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGIS 356
            SAKYVPFNA P  TESYSLDE+VYRS+SGGLLDV+HDM ALK +DGAYW+ LFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK+FL MNDLWVKHCGIS
Sbjct:   80 SAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGIS 197
[Close]
BLAST of CF504395 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 9.725e-59
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 3 
Query:    3 SAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGIS 356
            SA+YVPFNA PS TESYSLDE+VYRSQSG LLDVQHD  ALK YDG +W+ LFDSRVGKT WPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK++LQMNDLWVKHCGIS
Sbjct:   71 SARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGIS 188
[Close]
BLAST of CF504395 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.270e-58
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 3 
Query:    3 SAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGIS 356
            SA+YVPFNAGP+  E YSLDE+VYRS+SGGLLDVQHDM ALK +DG YW++LFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGK+FL M DLWVKHCGIS
Sbjct:   73 SARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGIS 190
The following BLAST results are available for this feature:
BLAST of CF504395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THRC1_ARATH2.559e-5987.29Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC2_ARATH9.725e-5986.44Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_SOLTU1.270e-5886.44Threonine synthase, chloroplastic OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-884 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504395 ID=CF504395; Name=CF504395; organism=Citrus sinensis; type=EST; length=356bp
TTTCTGCAAAGTACGTGCCATTCAATGCGGGGCCGTCTTGTACCGAGTCG
TATTCTCTCGACGAGGTCGTGTACAGGTCCCAGTCTGGGGGACTTCTCGA
CGTGCAGCACGACATGGGCGCTTTGAAGCACTACGACGGCGCTTACTGGA
AGGCGCTGTTCGATTCACGAGTCGGCAAAACGACGTGGCCGTACGGATCA
GGGGTTTGGTCAAAGAAAGAGTGGGTGCTGCCCGAGATTGATAGTGATGA
TATCGTGAGCGCTTTCGAAGGGAACTCGAATCTGTTCTGGGCTGAAAGAT
TTGGCAAAGAGTTTTTGCAAATGAATGATTTGTGGGTTAAGCACTGTGGG
ATTAGT
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