CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8980 contig Csv1_Contig8980:131..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.686e-71
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGP DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYETTAR
Sbjct:   25 PVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 139          

HSP 2 Score: 50.0618 bits (118), Expect = 5.686e-71
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPPTSCS+ P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.645e-70
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TAR
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTAR 139          

HSP 2 Score: 50.0618 bits (118), Expect = 1.645e-70
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPPTSCS+ P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.798e-70
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD++KYE+TAR
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139          

HSP 2 Score: 50.0618 bits (118), Expect = 2.798e-70
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPPTSCS+ P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.648e-70
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD++KYE+TAR
Sbjct:   25 PVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139          

HSP 2 Score: 50.0618 bits (118), Expect = 3.648e-70
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPPTSCS+ P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.758e-70
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGP +SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE TAR
Sbjct:   25 PVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATAR 139          

HSP 2 Score: 50.0618 bits (118), Expect = 4.758e-70
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPPTSCS+ P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 1.795e-69
Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ EDMFHWQATIMGPP+SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE+TAR
Sbjct:   25 PVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTAR 139          

HSP 2 Score: 47.3654 bits (111), Expect = 1.795e-69
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRILKELKDLQKDPP++CS+ P
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.318e-65
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P  +DMF WQATIMGP DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+
Sbjct:   25 PTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQ 139          

HSP 2 Score: 43.1282 bits (100), Expect = 4.318e-65
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MASKRI KEL+DLQ+DPP SCS+ P
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.768e-64
Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P  EDMFHWQATIMGP +SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTD++KYE  AR
Sbjct:   25 PTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMAR 139          

HSP 2 Score: 43.1282 bits (100), Expect = 2.768e-64
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA++RILKELK+LQ+DPP SCS+ P
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.903e-60
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D+FHWQATIMGP DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTDRS+YE +AR
Sbjct:   25 PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAR 139          

HSP 2 Score: 37.3502 bits (85), Expect = 3.903e-60
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI +EL DL KDPP+SCS+ P
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGP 25          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.648e-60
Identity = 91/115 (79.13%), Postives = 107/115 (93.04%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D++HWQA+IMGP DSPYAGGVF ++IHFP DYPFKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YKTDR KYE TAR
Sbjct:   26 PVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAR 140          

HSP 2 Score: 40.817 bits (94), Expect = 8.648e-60
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            +SKRI KEL DL++DPPTSCS+ P
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGP 26          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBC4_SOLLC5.686e-7195.65Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH1.645e-7093.91Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC9_ARATH2.798e-7093.91SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC10_ARATH3.648e-7093.91Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH4.758e-7093.91Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH1.795e-6993.04Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH4.318e-6589.57Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH2.768e-6487.83Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO3.903e-6082.61Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_YEAST8.648e-6079.13Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
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