CF504400

Overview
NameCF504400
Unique NameCF504400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7870 contig Csv1_Contig7870:125..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 1.949e-65
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 2
Query:   29 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            MGKGPGLYT+IGKKARDLLYKDYQSDHKF+ITTYSPTGV ITSSG+KKG+LFLADVNTQLKNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVNFS V
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGV 134          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.544e-62
Identity = 118/134 (88.06%), Postives = 126/134 (94.03%), Query Frame = 2
Query:   29 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            M KGPGLYTDIGKKARDLLYKDY SD KFTI+TYSPTGVAITSSGTKKGELFL DVNTQLKNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVNFS+V
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSV 134          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 8.474e-61
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 2
Query:   29 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            M KGPGLY+DIGKKARDLLY+DY SDHKFT+TTYS TGVAIT+SG KKGELFLADV+TQLKNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VNFS V
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGV 134          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 2.092e-51
Identity = 96/134 (71.64%), Postives = 110/134 (82.09%), Query Frame = 2
Query:   29 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            M KGPGLYT+IGKKARDLLY+DYQ D KF++TTYS TGVAIT++GT KG LFL DV TQ+KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVNFS V
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGV 134          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 3.569e-51
Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 2
Query:   29 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            M KGPGLYT+IGKKARDLLYKD+ SD KF+ITT+SP GVAITS+GTKKG+L L DV  Q + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VNFS V
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGV 134          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 7.441e-49
Identity = 88/131 (67.18%), Postives = 111/131 (84.73%), Query Frame = 2
Query:   38 GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 430
            GPGLY +IGKKARDLLY+DYQ+DHKFT+TTY+  GVAIT++ TKK +L   ++ +Q+KNKNIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VN S+V
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSV 133          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.693e-48
Identity = 89/130 (68.46%), Postives = 112/130 (86.15%), Query Frame = 2
Query:   38 GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFS 424
            GPGLY+ IGKKA+DLLY+DYQ+DHKFT+TTY+  G AIT++ TKK +L + ++ +Q+KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VN S
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLS 132          
BLAST of CF504400 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.372e-41
Identity = 79/128 (61.72%), Postives = 102/128 (79.69%), Query Frame = 2
Query:   44 GLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFS 424
            GLYTDIGKK RDLLYKDY +  KF +TT SP GVAIT++GT+K E    +++TQ+KNK +T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VN S
Sbjct:    6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLS 133          
The following BLAST results are available for this feature:
BLAST of CF504400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU1.949e-6589.55Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA1.544e-6288.06Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_SOLTU8.474e-6183.58Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC2_ARATH2.092e-5171.64Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH3.569e-5174.63Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ7.441e-4967.18Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT3.693e-4868.46Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE4.372e-4161.72Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-889 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504400 ID=CF504400; Name=CF504400; organism=Citrus sinensis; type=EST; length=432bp
TCCACGGAGGAAAAAAAAAAATTCAATCATGGGCAAGGGTCCTGGTCTCT
ACACTGATATTGGCAAAAAAGCCAGAGATCTTTTGTACAAGGATTATCAG
AGCGACCACAAGTTCACTATCACTACCTACTCTCCGACTGGAGTTGCTAT
TACATCATCTGGAACAAAAAAGGGTGAGCTGTTTCTAGCTGATGTTAATA
CCCAGCTGAAGAACAAGAATATCACAACTGATCTCAAAGTGGACACTGCC
TCCAATCTTTTCACAACTATCACTGTTGATGAACCTGCTCCTGGGCTGAA
AACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTGGCAAGGTTGAAC
TCCAGTATTTGCATGATTATGCGGGGATAAGCACAAGTGTCGGCTTAACA
GCGAATCCTATTGTTAACTTCTCGGCTGTGAT
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