CF504403

Overview
NameCF504403
Unique NameCF504403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504403_ssr8 microsatellite CF504403_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2178 contig Csv1_Contig2178:55..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MPK3_ARATH (Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.681e-64
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   46 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            G GQ  DFPAV THGGQFI Y+IFG+LFEIT+KYRPPI+PIGRGAYGIVCSVL+TETNELVAMKKIAN F
Sbjct:    4 GGGQYTDFPAVETHGGQFISYDIFGSLFEITSKYRPPIIPIGRGAYGIVCSVLDTETNELVAMKKIANAF 73          

HSP 2 Score: 116.701 bits (291), Expect = 9.681e-64
Identity = 53/63 (84.13%), Postives = 61/63 (96.83%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDNHMDAKRTLREIKLL+H DHEN+IA++DVVPPPLRR+F+DVYI+ ELMDTDL+QIIRSNQ
Sbjct:   72 AFDNHMDAKRTLREIKLLRHLDHENIIAIRDVVPPPLRRQFSDVYISTELMDTDLHQIIRSNQ 134          

HSP 3 Score: 43.5134 bits (101), Expect = 9.681e-64
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            SLSEEHCQYFLYQLLRGLK
Sbjct:  135 SLSEEHCQYFLYQLLRGLK 153          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MPK6_ARATH (Mitogen-activated protein kinase 6 OS=Arabidopsis thaliana GN=MPK6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.936e-56
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   64 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            + PA  +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS +N+ETNE VA+KKIAN F
Sbjct:   35 NIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSAMNSETNESVAIKKIANAF 98          

HSP 2 Score: 107.457 bits (267), Expect = 5.936e-56
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHEN++A++D++PPPLR  F DVYIA ELMDTDL+QIIRSNQ
Sbjct:   97 AFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPLRNAFNDVYIAYELMDTDLHQIIRSNQ 159          

HSP 3 Score: 41.5874 bits (96), Expect = 5.936e-56
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            +LSEEHCQYFLYQ+LRGLK
Sbjct:  160 ALSEEHCQYFLYQILRGLK 178          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MMK1_MEDSA (Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.704e-55
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   13 ESKMADVAQVNGVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            ++ M+D A         + PAV +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS  N+ETNE VA+KKIAN F
Sbjct:   10 DTVMSDAAPAPPQMGIENIPAVLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSAHNSETNEHVAVKKIANAF 90          

HSP 2 Score: 105.531 bits (262), Expect = 1.704e-55
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHENV+A++D+VPPP R  F DVYIA ELMDTDL+QIIRSNQ
Sbjct:   89 AFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQ 151          

HSP 3 Score: 41.5874 bits (96), Expect = 1.704e-55
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            +LSEEHCQYFLYQ+LRGLK
Sbjct:  152 ALSEEHCQYFLYQILRGLK 170          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: NTF4_TOBAC (Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.885e-55
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   64 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            + PA  +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS LN+ETNE VA+KKIAN F
Sbjct:   32 NIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAF 95          

HSP 2 Score: 105.145 bits (261), Expect = 2.885e-55
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHEN++A++D++PPP R  F DVYIA ELMDTDL+QIIRSNQ
Sbjct:   94 AFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQ 156          

HSP 3 Score: 41.2022 bits (95), Expect = 2.885e-55
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  442 LSEEHCQYFLYQLLRGLK 495
            LSEEHCQYFLYQ+LRGLK
Sbjct:  158 LSEEHCQYFLYQILRGLK 175          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.077e-54
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   46 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            G G   +  A  +HGG+FIQYNIFGN+FE+TAKY+PPI+PIG+GAYGIVCS LN+ET E VA+KKIAN F
Sbjct:   33 GAGMMENIQATLSHGGRFIQYNIFGNVFEVTAKYKPPILPIGKGAYGIVCSALNSETGEQVAIKKIANAF 102          

HSP 2 Score: 105.531 bits (262), Expect = 1.077e-54
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHEN++A++D++PPP R  F DVYIA ELMDTDL+QIIRSNQ
Sbjct:  101 AFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQRNSFNDVYIAYELMDTDLHQIIRSNQ 163          

HSP 3 Score: 41.5874 bits (96), Expect = 1.077e-54
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            +LSEEHCQYFLYQ+LRGLK
Sbjct:  164 ALSEEHCQYFLYQILRGLK 182          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MAPK_PEA (Mitogen-activated protein kinase homolog D5 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.077e-54
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   64 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            + PA  +HGG+FIQYNIFGN+FE+TAKYRPPIMPIG+GAYGIVCS  N+ETNE VA+KKIAN F
Sbjct:   34 NIPATLSHGGRFIQYNIFGNIFEVTAKYRPPIMPIGKGAYGIVCSAHNSETNEHVAVKKIANAF 97          

HSP 2 Score: 104.375 bits (259), Expect = 1.077e-54
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKL++H DHENV+A++D+VPPP R  F DVYIA ELMDTDL+QIIRSNQ
Sbjct:   96 AFDNKIDAKRTLREIKLVRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQ 158          

HSP 3 Score: 41.5874 bits (96), Expect = 1.077e-54
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            +LSEEHCQYFLYQ+LRGLK
Sbjct:  159 ALSEEHCQYFLYQILRGLK 177          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MPK6_ORYSJ (Mitogen-activated protein kinase 6 OS=Oryza sativa subsp. japonica GN=MPK6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.321e-49
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDNH+DAKRTLREIKLL+H DHEN+IA+KD++ PP R  F DVYI +ELMDTDL+QIIRSNQ
Sbjct:   77 AFDNHIDAKRTLREIKLLRHMDHENIIAIKDIIRPPRRDNFNDVYIVSELMDTDLHQIIRSNQ 139          

HSP 2 Score: 90.8929 bits (224), Expect = 4.321e-49
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   46 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            G G  A    + THGG+++ YN++GN FE+++KY PPI PIGRGAYGIVC+ +N+E  E VA+KKI N F
Sbjct:    9 GGGGGAQIKGMGTHGGRYVLYNVYGNFFEVSSKYAPPIRPIGRGAYGIVCAAVNSENGEEVAIKKIGNAF 78          

HSP 3 Score: 38.5058 bits (88), Expect = 4.321e-49
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  442 LSEEHCQYFLYQLLRGLK 495
            L+++HCQYFLYQLLRGLK
Sbjct:  141 LTDDHCQYFLYQLLRGLK 158          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MPK4_ARATH (Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.805e-48
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHENVIAVKD++ PP R  F DVYI  ELMDTDL+QIIRSNQ
Sbjct:   77 AFDNIIDAKRTLREIKLLKHMDHENVIAVKDIIKPPQRENFNDVYIVYELMDTDLHQIIRSNQ 139          

HSP 2 Score: 93.2041 bits (230), Expect = 7.805e-48
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   52 GQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            G  +    V THGG ++QYN++GNLFE++ KY PP+ PIGRGAYGIVC+  N+ET E VA+KKI N F
Sbjct:   11 GDQSSSKGVATHGGSYVQYNVYGNLFEVSRKYVPPLRPIGRGAYGIVCAATNSETGEEVAIKKIGNAF 78          

HSP 3 Score: 35.4242 bits (80), Expect = 7.805e-48
Identity = 13/18 (72.22%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  442 LSEEHCQYFLYQLLRGLK 495
            L+++HC++FLYQLLRGLK
Sbjct:  141 LTDDHCRFFLYQLLRGLK 158          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: NTF6_TOBAC (Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.921e-47
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AF+N +DAKRTLREIKLL H DHEN+I +KD+V PP R EF DVYI  ELMDTDL+QIIRS+Q
Sbjct:   72 AFENRIDAKRTLREIKLLSHMDHENIIKIKDIVRPPDREEFNDVYIVYELMDTDLHQIIRSSQ 134          

HSP 2 Score: 91.2781 bits (225), Expect = 4.921e-47
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   43 NGVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            N   +  +   +PTH G++++YN+ GN FE+T+KY PPI P+GRGAYG+VC   N+ET E VA+KKI N F
Sbjct:    3 NETNEKLEIKGIPTHEGKYVEYNVLGNFFEVTSKYIPPIQPVGRGAYGMVCCATNSETKEEVAIKKIGNAF 73          

HSP 3 Score: 38.891 bits (89), Expect = 4.921e-47
Identity = 15/19 (78.95%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  439 SLSEEHCQYFLYQLLRGLK 495
            +L+++HCQYFLYQLLRGLK
Sbjct:  135 ALTDDHCQYFLYQLLRGLK 153          
BLAST of CF504403 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.384e-46
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 2
Query:  251 AFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQ 439
            AFDN +DAKRTLREIKLL+H DHENV+++KD++ PP +  F  VYI +ELMDTDL+QIIRSNQ
Sbjct:   71 AFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNHVYIVSELMDTDLHQIIRSNQ 133          

HSP 2 Score: 93.2041 bits (230), Expect = 2.384e-46
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   76 VPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANRF 255
            VPTHGG+++QYNI+GNLFE++ KY PPI  +GRGAYGIVC+ +N ET E VA+KKI N F
Sbjct:   13 VPTHGGRYLQYNIYGNLFEVSRKYVPPIRSVGRGAYGIVCAAVNAETREEVAIKKIGNAF 72          

HSP 3 Score: 35.039 bits (79), Expect = 2.384e-46
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  442 LSEEHCQYFLYQLLRGLK 495
            ++++HC+YF+YQLLRGLK
Sbjct:  135 MTDDHCRYFVYQLLRGLK 152          
The following BLAST results are available for this feature:
BLAST of CF504403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
MPK3_ARATH9.681e-6484.29Mitogen-activated protein kinase 3 OS=Arabidopsis ... [more]
MPK6_ARATH5.936e-5675.00Mitogen-activated protein kinase 6 OS=Arabidopsis ... [more]
MMK1_MEDSA1.704e-5564.20Mitogen-activated protein kinase homolog MMK1 OS=M... [more]
NTF4_TOBAC2.885e-5576.56Mitogen-activated protein kinase homolog NTF4 OS=N... [more]
MPK1_ORYSJ1.077e-5468.57Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]
MAPK_PEA1.077e-5476.56Mitogen-activated protein kinase homolog D5 OS=Pis... [more]
MPK6_ORYSJ4.321e-4976.19Mitogen-activated protein kinase 6 OS=Oryza sativa... [more]
MPK4_ARATH7.805e-4877.78Mitogen-activated protein kinase 4 OS=Arabidopsis ... [more]
NTF6_TOBAC4.921e-4773.02Mitogen-activated protein kinase homolog NTF6 OS=N... [more]
MMK2_MEDSA2.384e-4669.84Mitogen-activated protein kinase homolog MMK2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-892 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504403 ID=CF504403; Name=CF504403; organism=Citrus sinensis; type=EST; length=495bp
GAGAAAAAGAGAGAGAGTAAAATGGCTGACGTGGCGCAGGTCAACGGCGT
AGGTCAAACGGCTGATTTTCCTGCGGTACCGACGCACGGCGGTCAGTTTA
TACAGTACAATATATTTGGAAACTTGTTTGAAATCACGGCCAAGTATCGG
CCTCCGATCATGCCGATTGGTCGCGGCGCGTACGGGATCGTTTGCTCGGT
GTTGAATACGGAGACGAATGAGCTCGTTGCGATGAAGAAAATAGCGAATC
GCTTTTGATAATCACATGGATGCCAAGCGAACGCTTCGTGAGATTAAGCT
TCTGCAACATTTCGATCATGAAAATGTGATAGCTGTAAAAGATGTGGTTC
CCCCACCGTTACGAAGAGAATTCACTGATGTCTATATTGCTGCGGAACTC
ATGGACACTGACCTTTACCAAATTATTCGCTCAAATCAAGTTTATCCGAG
GAGCACTGCCAGTATTTCTTGTATCAACTTCTTCGAGGACTCAAG
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