CF504404

Overview
NameCF504404
Unique NameCF504404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504404_ssr34 microsatellite CF504404_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11278 contig Csv1_Contig11278:237..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKL_ARATH (Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.825e-59
Identity = 111/163 (68.10%), Postives = 135/163 (82.82%), Query Frame = 1
Query:   52 HVQPP--KMSAPQPQPRQQPMKS--SATSTRPV--QKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            HV P   K   P P+P  QP+    S  S+ PV  + P+T+LGKP EDIR+FY+LGKELGRGQFGITY+C E  TGN+YACKSILKRKL++KQD+ED+KREIQIMQ+L+GQ NIVE +GAYEDRQS+HLVMELC+GGELFD+IIAQGHY+E+AAA + R+IVN
Sbjct:   28 HVVPEHRKPQTPTPKPMTQPIHQQISTPSSNPVSVRDPDTILGKPFEDIRKFYSLGKELGRGQFGITYMCKEIGTGNTYACKSILKRKLISKQDKEDVKREIQIMQYLSGQPNIVEIKGAYEDRQSIHLVMELCAGGELFDRIIAQGHYSERAAAGIIRSIVN 190          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK_DAUCA (Calcium-dependent protein kinase OS=Daucus carota PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.131e-56
Identity = 108/153 (70.59%), Postives = 126/153 (82.35%), Query Frame = 1
Query:   73 SAPQPQPRQQPMKSSAT-STRPVQKPE--TVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            S PQ QP+ Q  ++  +   R V +PE  T+LGKP EDIR  YTLGKELGRGQFG  Y CTENS+G  YACKSILKRKLV+K D+EDIKREIQI+QHL+GQ NIVEF+G +EDRQSVHLVMELC+GGELFD+IIAQGHY+E+AAA +CR IVN
Sbjct:   39 SQPQAQPQPQVQQTGPSLKPRQVHRPESNTILGKPFEDIRGKYTLGKELGRGQFGCVYQCTENSSGQLYACKSILKRKLVSKNDKEDIKREIQILQHLSGQPNIVEFKGVFEDRQSVHLVMELCAGGELFDRIIAQGHYSERAAATICRQIVN 191          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK2_ORYSJ (Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.019e-55
Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 1
Query:   64 PKMSAPQPQPRQQPMKSSATSTRPV---------QKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            P  + PQP P  +   + +    PV           P+T+LGKP +D+R  Y+LGKELGRGQFG+TYLCTE ++G  YACKSI KRKLV+K D+EDI+REIQIMQHL+GQQNIVEFRGAYED+ +VH+VMELC+GGELFD+IIA+GHY+E+AAA +CRA+VN
Sbjct:   34 PSYNHPQPPPPAEVRYTPSAMNPPVVPPVVAPPKPTPDTILGKPYDDVRSVYSLGKELGRGQFGVTYLCTEIASGKQYACKSISKRKLVSKADKEDIRREIQIMQHLSGQQNIVEFRGAYEDKSNVHVVMELCAGGELFDRIIAKGHYSERAAATICRAVVN 195          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKF_ARATH (Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.443e-54
Identity = 100/152 (65.79%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   82 QPQPRQQPMKSSATSTRPVQ-----KPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            + +P  Q ++     T+P++     + ET+LGKP E+IR+ YTLGKELGRGQFGITY C ENSTGN+YACKSILKRKL  KQD +D+KREIQIMQ+L+GQ+NIVE +GAYEDRQS+HLVMELC G ELFD+IIAQGHY+EKAAA + R+++N
Sbjct:   61 ESKPVNQQIEKKHVLTQPLKPIVFRETETILGKPFEEIRKLYTLGKELGRGQFGITYTCKENSTGNTYACKSILKRKLTRKQDIDDVKREIQIMQYLSGQENIVEIKGAYEDRQSIHLVMELCGGSELFDRIIAQGHYSEKAAAGVIRSVLN 212          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK2_MAIZE (Calcium-dependent protein kinase 2 OS=Zea mays GN=CPK2 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.803e-54
Identity = 101/159 (63.52%), Postives = 128/159 (80.50%), Query Frame = 1
Query:   61 PPKMSAPQPQPRQQPMKSSATSTRPVQKP-----ETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            PP+ +A   + R  P  +++++  PV  P     +T+LGK  ED+R  Y+ GKELGRGQFG+TYLCTE ++G  YACKSI KRKLV+K DREDI+REIQIMQHL+GQ NIVEFRGAYED+ +VH+VMELC+GGELFD+IIA+GHYTE+AAA +CRA+VN
Sbjct:   20 PPQQAA---EVRYTPSATNSSAVPPVAVPPKPTADTILGKQYEDVRSVYSFGKELGRGQFGVTYLCTEIASGRQYACKSISKRKLVSKADREDIRREIQIMQHLSGQPNIVEFRGAYEDKSNVHVVMELCAGGELFDRIIAKGHYTERAAATICRAVVN 175          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKJ_ARATH (Calcium-dependent protein kinase 19 OS=Arabidopsis thaliana GN=CPK19 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 7.579e-54
Identity = 97/155 (62.58%), Postives = 126/155 (81.29%), Query Frame = 1
Query:   55 VQPPKMSAPQPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIV 519
            VQP K+  P PQP+++    +      +Q+PE +LG+P EDI++ Y+LG+ELGRGQFGITY+CTE S+G ++ACKSILKRKL+  +DRED++REIQIM +L+GQ NIVE +GAYEDRQSVHLVMELC GGELFDKI  +GHY+EKAAA + R++V
Sbjct:   53 VQPHKLPLPLPQPQEKQKLINHQKQSTLQQPEPILGRPFEDIKEKYSLGRELGRGQFGITYICTEISSGKNFACKSILKRKLIRTKDREDVRREIQIMHYLSGQPNIVEIKGAYEDRQSVHLVMELCEGGELFDKITKRGHYSEKAAAEIIRSVV 207          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK9_ARATH (Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana GN=CPK9 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.380e-53
Identity = 100/171 (58.48%), Postives = 126/171 (73.68%), Query Frame = 1
Query:   58 QPPKMSAPQPQPRQQPMKSSATSTRP----------------VQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            Q P    PQ +  QQP K  + +++P                  K  ++L    ED++ FYTLGKELGRGQFG+TYLCTENSTG  YACKSI K+KLV K D++D++REIQIMQHL+GQ NIVEF+GAYED ++V+LVMELC+GGELFD+IIA+GHYTE+AAA++CR IVN
Sbjct:   31 QDPPSYTPQARTTQQPEKPGSVNSQPPPWRAAAAAPGLSPKTTTKSNSILENAFEDVKLFYTLGKELGRGQFGVTYLCTENSTGKKYACKSISKKKLVTKADKDDMRREIQIMQHLSGQPNIVEFKGAYEDEKAVNLVMELCAGGELFDRIIAKGHYTERAAASVCRQIVN 201          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKX_ARATH (Calcium-dependent protein kinase 33 OS=Arabidopsis thaliana GN=CPK33 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.521e-51
Identity = 98/159 (61.64%), Postives = 123/159 (77.36%), Query Frame = 1
Query:   52 HVQPPKMSAP--QPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            H  P K+S    QP P + P K S  +         +L KP ED++ FYTL KELGRGQFG+TYLCTE STG  +ACKSI K+KLV K D+ED++REIQIMQHL+GQ NIVEF+GAYED ++V+LVMELC+GGELFD+I+A+GHY+E+AAA++CR IVN
Sbjct:   33 HQDPSKISTGTNQPPPWRNPAKHSGAAA--------ILEKPYEDVKLFYTLSKELGRGQFGVTYLCTEKSTGKRFACKSISKKKLVTKGDKEDMRREIQIMQHLSGQPNIVEFKGAYEDEKAVNLVMELCAGGELFDRILAKGHYSERAAASVCRQIVN 183          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.282e-50
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 1
Query:   82 QPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            Q    ++P   S +    V+ PET+LGKP EDIR+FY+LG+ELGRG  GITY+C E  TGN YACKSILKRKL+++  RED+K EIQIMQHL+GQ N+VE +G+YEDR SVHLVMELC+GGELFD+IIAQGHY+E+AAA   ++IV+
Sbjct:   33 QVPDHRKPQIPSPSIPISVRDPETILGKPFEDIRKFYSLGRELGRGGLGITYMCKEIGTGNIYACKSILKRKLISELGREDVKTEIQIMQHLSGQPNVVEIKGSYEDRHSVHLVMELCAGGELFDRIIAQGHYSERAAAGTIKSIVD 179          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPKH_ARATH (Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.341e-49
Identity = 93/153 (60.78%), Postives = 119/153 (77.78%), Query Frame = 1
Query:   64 PKMSAPQPQPRQQPMKSS-ATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIV 519
            P   A  PQ +  P     AT   P+     VLG+P+ED++  Y+LGKELGRGQFG+T+LCT+ +TG+ +ACK+I KRKLVNK+D ED++RE+QIM HL GQ NIVE +GAYED+ SVHLVMELC+GGELFD+IIA+GHY+E+AAA+L R IV
Sbjct:   33 PTAEASVPQSKHAPPSPPPATKQGPIGP---VLGRPMEDVKASYSLGKELGRGQFGVTHLCTQKATGHQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKHSVHLVMELCAGGELFDRIIAKGHYSERAAASLLRTIV 182          
The following BLAST results are available for this feature:
BLAST of CF504404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
CDPKL_ARATH7.825e-5968.10Calcium-dependent protein kinase 21 OS=Arabidopsis... [more]
CDPK_DAUCA2.131e-5670.59Calcium-dependent protein kinase OS=Daucus carota ... [more]
CDPK2_ORYSJ4.019e-5562.35Calcium-dependent protein kinase isoform 2 OS=Oryz... [more]
CDPKF_ARATH4.443e-5465.79Calcium-dependent protein kinase 15 OS=Arabidopsis... [more]
CDPK2_MAIZE5.803e-5463.52Calcium-dependent protein kinase 2 OS=Zea mays GN=... [more]
CDPKJ_ARATH7.579e-5462.58Calcium-dependent protein kinase 19 OS=Arabidopsis... [more]
CDPK9_ARATH8.380e-5358.48Calcium-dependent protein kinase 9 OS=Arabidopsis ... [more]
CDPKX_ARATH3.521e-5161.64Calcium-dependent protein kinase 33 OS=Arabidopsis... [more]
CDPKN_ARATH2.282e-5063.95Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
CDPKH_ARATH7.341e-4960.78Calcium-dependent protein kinase 17 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-893 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504404 ID=CF504404; Name=CF504404; organism=Citrus sinensis; type=EST; length=522bp
GCAACACAAACCCCTTATCAAACTTATCAACAACAGCAGCAGCAGCAACT
ACACGTGCAGCCTCCTAAAATGTCTGCCCCACAGCCACAACCAAGGCAGC
AACCGATGAAATCTTCTGCAACAAGCACAAGGCCAGTGCAAAAGCCAGAA
ACAGTGCTGGGCAAGCCTCTAGAAGACATTAGACAATTTTACACATTAGG
GAAAGAATTGGGTAGAGGCCAGTTTGGAATCACATATTTGTGCACTGAGA
ATTCAACAGGCAATAGCTATGCATGCAAGTCAATTTTAAAGAGGAAGCTT
GTGAATAAACAAGATAGAGAGGATATAAAGCGAGAGATTCAGATAATGCA
GCACTTGGCTGGTCAACAAAATATTGTTGAATTTAGGGGTGCTTACGAGG
ACAGACAAAGTGTTCATCTTGTGATGGAGTTGTGTTCTGGTGGTGAGCTT
TTTGATAAGATTATTGCTCAGGGGCATTATACCGAGAAAGCTGCTGCCGC
TCTTTGTAGGGCTATTGTTAAT
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