CF504408

Overview
NameCF504408
Unique NameCF504408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504408_ssr37 microsatellite CF504408_ssr37:37..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11930 contig Csv1_Contig11930:42..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504408 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.156e-36
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:  130 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLVEEGPKLQRLAIKK 411
            M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E  IE AL+KAE  + EKNRA+ VA+NAEIRRTKARL EE PKLQRLA+K+
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKR 94
[Close]
BLAST of CF504408 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.994e-31
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:  130 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLVEEGPKLQRLAIKK 411
            M VID++TRVDSICKKY+KYD+ +QR+ NVSGDDAF+RLY AVE  +E  LQK E  S+E N+A  VA+NAEIRRTKARL+E  PKLQRL++KK
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKK 94
[Close]
BLAST of CF504408 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.113e-30
Identity = 63/94 (67.02%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:  130 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLVEEGPKLQRLAIKK 411
            M VIDI+ RVD ICKKYDKYD++K RE   SGDDAF+RL+ ++++DIEA L+KAE AS EKNRA+ VA+NAE+RRTKARL E+  KLQ+LA+KK
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKK 94
The following BLAST results are available for this feature:
BLAST of CF504408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH5.156e-3678.72Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP73_ARATH4.994e-3168.09Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
SYP72_ARATH1.113e-3067.02Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-897 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504408 ID=CF504408; Name=CF504408; organism=Citrus sinensis; type=EST; length=412bp
CCCCGCACCTGCAAATACTAACTGCGACTAAAAAAAAAATTAAATTAAAT
TAATTGAACTTAAATCCTTCTCTTCTCTTTTTGAATTATTCGTTCTCATC
CTCACCATTTTTGAAGTGATTTATTCAAAATGAGCGTGATCGACATATTA
ACGAGAGTAGACTCGATCTGCAAGAAGTACGACAAATACGACGTCGAAAA
GCAGAGGGAGACCAATGTCTCCGGTGACGATGCCTTCGCTCGCCTATACG
GCGCCGTTGAGGCCGACATCGAAGCAGCTCTTCAGAAGGCGGAGTCTGCT
TCTAATGAGAAAAACAGGGCATCTGTGGTGGCTTTGAACGCTGAAATTCG
TAGGACTAAGGCTCGATTGGTAGAAGAGGGCCCCAAGTTGCAGAGACTGG
CCATAAAGAAGG
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