CF504409

Overview
NameCF504409
Unique NameCF504409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:28..313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.880e-40
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KYA KDAFHL
Sbjct:   10 RQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.290e-39
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+A KDAFHL
Sbjct:   10 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.092e-38
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.433e-38
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.433e-38
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.208e-37
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.208e-37
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.691e-37
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.335e-36
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHL 87
[Close]
BLAST of CF504409 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.335e-36
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 3 
Query:   54 RQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYARKDAFHL 287
            RQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K A KDAFHL
Sbjct:   10 RQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHL 87
The following BLAST results are available for this feature:
BLAST of CF504409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_VITRI9.880e-4096.1560S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.290e-3996.1560S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_SOLME1.092e-3894.8760S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL101_ORYSJ2.433e-3893.5960S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI2.433e-3893.5960S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL103_ARATH1.208e-3792.3160S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ARATH1.208e-3792.3160S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ARATH2.691e-3791.0360S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL102_ORYSJ1.335e-3691.0360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.335e-3691.0360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-898 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504409 ID=CF504409; Name=CF504409; organism=Citrus sinensis; type=EST; length=287bp
CTGAGACCGAACACGAACGCTCGCCATGGGAAGAAGACCGGCAAGGTGTT
ACCCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTTTTGCCGCGG
TGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAG
GCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAG
AACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTA
CATGGCCAAGTACGCCCGCAAGGATGCTTTCCATTTG
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