CF504411

Overview
NameCF504411
Unique NameCF504411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX11A_ARATH (Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 3
Query:   54 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            RDFLNHLE YL+KRDGVDKLLK+SRYATKIILASS++PET  +  RLKSFESSVG+SRKAFRLGKFVQD+NALR+S  D  S  +L+L +IAYGGE
Sbjct:   15 RDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQDINALRSSRWD--SNHELVLLIIAYGGE 108          
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX113_ORYSJ (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.909e-23
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            RDFL H+EAYL++RDGVDKLLK+SRYA ++ LA+  LP     + RLKSFESSVGLSRKAFRLGKFVQ+VNALR     +       ++++AYGGE
Sbjct:   23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARLKSFESSVGLSRKAFRLGKFVQNVNALR-----AHPHPPPAVALLAYGGE 111          
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX113_ORYSI (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.909e-23
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            RDFL H+EAYL++RDGVDKLLK+SRYA ++ LA+  LP     + RLKSFESSVGLSRKAFRLGKFVQ+VNALR     +       ++++AYGGE
Sbjct:   23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARLKSFESSVGLSRKAFRLGKFVQNVNALR-----AHPHPPPAVALLAYGGE 111          
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX112_ORYSJ (Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica GN=PEX11-2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   54 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP--LTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            RD L H+EAYL++RDGVD LLK+S YA ++ LA +     LP   T RL+SFESSVGLSRKAFRLGKFVQ +NALR +          +L ++AYGG+
Sbjct:   25 RDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQ 122          
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX114_ORYSJ (Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   57 DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            D L+ L  +LAKRDG+DKL+K  +Y +K  LA      + P L GR K++E+S GLSRKAFR G+F+  +N LR +       E   L+V+A  GE
Sbjct:    5 DTLDKLVVFLAKRDGIDKLVKTFQYVSK--LAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFLTGLNGLRRA-----PGEFGALAVLANAGE 93          
BLAST of CF504411 vs. ExPASy Swiss-Prot
Match: PX114_ORYSI (Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica GN=PEX11-4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   57 DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 341
            D L+ L  +LAKRDG+DKL+K  +Y +K  LA      + P L GR K++E+S GLSRKAFR G+F+  +N LR +       E   L+V+A  GE
Sbjct:    5 DTLDKLVVFLAKRDGIDKLVKTFQYVSK--LAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFLTGLNGLRRA-----PGEFGALAVLANAGE 93          
The following BLAST results are available for this feature:
BLAST of CF504411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PX11A_ARATH4.783e-3476.04Peroxisomal membrane protein 11A OS=Arabidopsis th... [more]
PX113_ORYSJ2.909e-2361.46Peroxisomal membrane protein 11-3 OS=Oryza sativa ... [more]
PX113_ORYSI2.909e-2361.46Peroxisomal membrane protein 11-3 OS=Oryza sativa ... [more]
PX112_ORYSJ2.722e-2156.12Peroxisomal membrane protein 11-2 OS=Oryza sativa ... [more]
PX114_ORYSJ3.336e-1144.79Peroxisomal membrane protein 11-4 OS=Oryza sativa ... [more]
PX114_ORYSI3.336e-1144.79Peroxisomal membrane protein 11-4 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-900 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504411 ID=CF504411; Name=CF504411; organism=Citrus sinensis; type=EST; length=342bp
CTTCAACAGCCCTCGCTCCCTCCAAATCGTCCGCTGATTCAAAGCCCAAA
GATAGAGACTTCTTAAACCATTTAGAAGCATATCTCGCGAAACGAGACGG
CGTTGACAAGCTTCTCAAACTCTCCAGATACGCGACGAAGATCATCTTAG
CCTCTTCAGTCCTTCCAGAAACTCTTCCCCTAACTGGCCGACTCAAGAGC
TTCGAGTCCAGCGTGGGACTGAGTCGCAAAGCCTTTCGACTCGGAAAATT
CGTCCAAGACGTCAACGCTTTGCGGAACTCTCATCTCGATTCCCTTTCCA
GGGAAGATCTTATTCTCTCCGTTATCGCCTACGGAGGTGAAG
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