CF504413

Overview
NameCF504413
Unique NameCF504413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig540 contig Csv1_Contig540:1..338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTD-IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTG 240
            RGWVF NNG++L+IGVP RVSY++FV ++ GT+ +  G+CIDVF AAV LLPYAVP KFIPYG+G +NP+Y+ ++  ITTG
Sbjct:  455 RGWVFSNNGKELKIGVPLRVSYKEFVSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTG 535          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 53/82 (64.63%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGT-DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 243
            RGW+F NNGR+LRIGVP+R S++DFV +VNG+ + V GYCIDVF AAV+LL Y VP++FI +GDG  NP Y+EL+N++TTGV
Sbjct:  455 RGWIFRNNGRRLRIGVPDRASFKDFVSRVNGSSNKVQGYCIDVFEAAVKLLSYPVPHEFIFFGDGLTNPNYNELVNKVTTGV 536          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.074e-25
Identity = 49/94 (52.13%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQLTR 282
            RGWVFPNNGR+LRIGVP+R S+++FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GV   +   +A +T+
Sbjct:  457 RGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFDAVVGDIAIVTK 550          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 49/79 (62.03%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITT 237
            RGWVFPNNG +++IGVP+RVSYR FV   + T +V G CIDVF+AA+ LL Y VPY+F+P+G+  +NP+YSELIN+I T
Sbjct:  458 RGWVFPNNGNEIKIGVPDRVSYRQFVSVDSETGMVRGLCIDVFVAAINLLAYPVPYRFVPFGNNRENPSYSELINKIIT 536          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQI 231
            RGWVFPNNG+ LRIGVPNRVSY D+V K      V GYCIDVF AA+ LLPY VP  +I YGDG +NP+Y  L+N++
Sbjct:  483 RGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAIELLPYPVPRTYILYGDGKRNPSYDNLVNEV 559          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 243
            RGWVF NNGR LRIGVPNR  + + V  V    ++ G+C+DVF+AA+ LLPYAVP++ + +G+GH NP+ SEL+  ITTGV
Sbjct:  447 RGWVFSNNGRHLRIGVPNRYRFEEVV-SVKSNGMITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGV 526          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.191e-22
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQLT 279
            RGWVFP NG+ L+IGVPNRVSY+++  K      V G+CID+F AA++LLPY VP  +I YGDG KNP+Y  LI+++   +  +    V  +T
Sbjct:  476 RGWVFPENGKPLKIGVPNRVSYKNYASKDKNPLGVKGFCIDIFEAAIQLLPYPVPRTYILYGDGKKNPSYDNLISEVAANIFDVAVGDVTIIT 568          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 243
            RGWV  ++   L+I VP RVS+ +FV +  N +  + G+CIDVF+ A++ +PY+VPY F P+G+GH +P Y+ LI  +T GV
Sbjct:  448 RGWVIADSADPLKIVVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGV 529          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVF----KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPY--GDGHKNPTYSELINQITTG 240
            +GW  P  G++LRIGVP R  Y D V      +  + +V G+CID F A +R LPY V Y+FIP+   DG     Y++L+ Q+  G
Sbjct:  443 KGWQIPTKGKKLRIGVPKRTGYTDLVKVTRDPITNSTVVTGFCIDFFEAVIRELPYDVSYEFIPFEKPDGKTAGNYNDLVYQVYLG 528          
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.165e-12
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDI----VHGYCIDVFLAAVRLLPYAVPYKFIPY--GDGHKNPTYSELINQITTG 240
            +GW FP N ++LRI VP +  + +FV      +     + G+CIDVF  A+R +PYAVPY++IP+   DG    +Y E++  +  G
Sbjct:  451 KGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPDGKPRGSYDEMVYHVFLG 536          
The following BLAST results are available for this feature:
BLAST of CF504413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GLR33_ARATH1.072e-2562.96Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH1.072e-2564.63Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH4.074e-2552.13Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ6.949e-2562.03Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR34_ARATH5.882e-2463.64Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR36_ARATH1.449e-2256.79Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH7.191e-2249.46Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH9.096e-1746.34Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR23_ARATH7.969e-1341.86Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]
GLR26_ARATH5.165e-1238.37Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-902 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504413 ID=CF504413; Name=CF504413; organism=Citrus sinensis; type=EST; length=338bp
CGTGGTTGGGTCTTTCCAAATAATGGAAGGCAATTAAGAATTGGAGTCCC
AAATCGAGTTAGCTATCGAGACTTTGTCTTTAAAGTGAATGGTACTGATA
TAGTTCATGGGTATTGCATTGATGTATTCCTTGCAGCTGTACGTTTGCTT
CCATATGCAGTTCCTTATAAATTTATTCCATATGGAGATGGCCACAAGAA
TCCAACCTACAGCGAACTCATTAATCAAATCACAACTGGGGTTAGTAGAA
TCTTAACGAAGAAAGTTGCACAACTTACCAGGGTGAGCCTATAATTCCTA
CCAATCCTGTGAATATTATTTTGTAGGTTTTTGATGCT
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