CF504421

Overview
NameCF504421
Unique NameCF504421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length210
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1841 contig Csv1_Contig1841:415..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504421 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.401e-25
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    5 DLSSYGVSLVDGFNVPMTATPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAF 202
            D S+YGVSLVDGFN+P+T TPHEGKGVCPVVGCRA+LL +CP  LQ RS  GHGPVV CKS CEAF
Sbjct:  128 DFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAF 193          
BLAST of CF504421 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.964e-11
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 2
Query:    5 DLSSYGVSLVDGFNVPMTATPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGT 208
            +L  Y VSLVDG+N+ M+  P +G G C   GC +DL   CP  LQVRS  G   VVACKS C AF +
Sbjct:  117 ELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGK-RVVACKSACSAFNS 183          
BLAST of CF504421 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.350e-11
Identity = 33/64 (51.56%), Postives = 38/64 (59.38%), Query Frame = 2
Query:   17 YGVSLVDGFNVPMTATPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGT 208
            Y VSLVDGFN+PM+ TP  G G C    C A++ A CP  LQ +     G VVAC S C  FGT
Sbjct:  127 YDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKG--SDGSVVACLSACVKFGT 188          
The following BLAST results are available for this feature:
BLAST of CF504421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OLP1_SOLLC1.401e-2577.27Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.964e-1151.47Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP_PRUAV3.350e-1151.56Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-910 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504421 ID=CF504421; Name=CF504421; organism=Citrus sinensis; type=EST; length=210bp
CAACGACCTCTCCTCCTACGGTGTCTCTCTCGTCGACGGCTTCAACGTCC
CAATGACTGCCACCCCGCACGAGGGCAAGGGCGTCTGTCCGGTGGTGGGT
TGTCGCGCTGATCTGCTAGCCACGTGTCCTCAGAACCTGCAGGTGAGGTC
ACCGCCGGGTCACGGCCCCGTGGTGGCATGTAAGAGTGGGTGTGAGGCGT
TTGGTACGGA
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