CF504428

Overview
NameCF504428
Unique NameCF504428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length224
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_DICDI (SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 44/73 (60.27%), Postives = 63/73 (86.30%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            L+GF++I IID+DTI++SNLNRQFLFR+ H+G SKAK+A+++V+K+  Q++ITAHH +VK  +F  EFFKQF+
Sbjct:   43 LTGFKNIDIIDLDTIDISNLNRQFLFRKQHIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFD 115          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_MOUSE (SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.795e-21
Identity = 44/72 (61.11%), Postives = 62/72 (86.11%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F PQ +I AHH ++ +P +NVEFF+QF
Sbjct:   38 LTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQF 109          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2B_XENLA (SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-B PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.768e-21
Identity = 44/72 (61.11%), Postives = 63/72 (87.50%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F P  SITA+H ++ +P +NVEFFKQF
Sbjct:   38 LTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQF 109          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_XENTR (SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 43/72 (59.72%), Postives = 64/72 (88.89%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F P+ +ITA+H ++ +P +NVEFFKQF
Sbjct:   38 LTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQF 109          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2A_XENLA (SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 43/72 (59.72%), Postives = 63/72 (87.50%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFFKQF
Sbjct:   38 LTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPDANITAYHDSIMNPDYNVEFFKQF 109          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_DANRE (SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 42/72 (58.33%), Postives = 63/72 (87.50%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF++I +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFF+ F
Sbjct:   39 LTGFKNIEVIDLDTIDVSNLNRQFLFQKKHVGKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNF 110          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_HUMAN (SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.271e-20
Identity = 42/72 (58.33%), Postives = 62/72 (86.11%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF
Sbjct:   38 LTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 109          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA2_SCHPO (Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe GN=uba2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.934e-18
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2
Query:    5 LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            +SG +++HIID+DTI++SNLNRQFLFR+ HV Q KA VA      F P + + A+HAN+K+ +FNV +F+QF+
Sbjct:   46 MSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQPKAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFD 118          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: SAE2_CAEEL (SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.305e-17
Identity = 36/74 (48.65%), Postives = 56/74 (75.68%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            A++GF+ +H+ID+DTI++SNLNRQFLFR+ HV  SKA  A   V +F PQ+ +T  H ++ + K+N+EFF+ ++
Sbjct:   33 AVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYD 106          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_RAT (NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.373e-14
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ IH+IDMDTI+VSNLNRQFLFR   VG+ KA+VA + +    P  ++  H   ++D  FN  F++QF+
Sbjct:   89 ALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFH 160          
The following BLAST results are available for this feature:
BLAST of CF504428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SAE2_DICDI7.355e-2260.27SUMO-activating enzyme subunit 2 OS=Dictyostelium ... [more]
SAE2_MOUSE2.795e-2161.11SUMO-activating enzyme subunit 2 OS=Mus musculus G... [more]
SAE2B_XENLA4.768e-2161.11SUMO-activating enzyme subunit 2-B OS=Xenopus laev... [more]
SAE2_XENTR1.062e-2059.72SUMO-activating enzyme subunit 2 OS=Xenopus tropic... [more]
SAE2A_XENLA1.062e-2059.72SUMO-activating enzyme subunit 2-A OS=Xenopus laev... [more]
SAE2_DANRE1.812e-2058.33SUMO-activating enzyme subunit 2 OS=Danio rerio GN... [more]
SAE2_HUMAN5.271e-2058.33SUMO-activating enzyme subunit 2 OS=Homo sapiens G... [more]
UBA2_SCHPO4.934e-1853.42Ubiquitin-activating enzyme E1-like OS=Schizosacch... [more]
SAE2_CAEEL9.305e-1748.65SUMO-activating enzyme subunit uba-2 OS=Caenorhabd... [more]
UBA3_RAT7.373e-1451.35NEDD8-activating enzyme E1 catalytic subunit OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-917 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504428 ID=CF504428; Name=CF504428; organism=Citrus sinensis; type=EST; length=224bp
CGCTCTCTCCGGCTTTCAAGACATTCATATTATTGACATGGACACCATAG
AAGTCAGTAACCTGAATAGACAGTTTTTATTTCGTCAATCACATGTGGGA
CAGTCTAAGGCCAAGGTTGCTCGAGATGCTGTCTTAAAATTTAGGCCTCA
AATGAGCATCACAGCACATCATGCAAACGTCAAGGATCCTAAGTTCAATG
TGGAATTCTTTAAACAATTCAATG
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