CF504429

Overview
NameCF504429
Unique NameCF504429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504429 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.697e-11
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   16 VACKSACEAFGDPRYCCSEAYRYA*HRVFLRCTSLFFKHVCPRAYSYAYDDKTST 180
            +ACKSAC AF  P+YCC+ A+  A         S  FK  CP+AYSYAYDD TST
Sbjct:  175 LACKSACTAFNQPQYCCTGAFDTA-RTCPATKYSRIFKQQCPQAYSYAYDDSTST 228

HSP 2 Score: 25.0238 bits (53), Expect = 7.697e-11
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2 
Query:  182 YTC-GSADYVIIFCP 223
            +TC G+ DYVI FCP
Sbjct:  229 FTCSGAPDYVITFCP 243
The following BLAST results are available for this feature:
BLAST of CF504429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TLP1_CASSA7.697e-1154.55Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-918 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504429 ID=CF504429; Name=CF504429; organism=Citrus sinensis; type=EST; length=271bp
GGTCGGGGAGGTAGTGTGGCGTGTAAGAGCGCGTGTGAGGCTTTCGGTGA
TCCGAGGTATTGTTGCAGTGAGGCGTACCGCTACGCCTGACACCGTGTTT
TCCTTCGGTGTACCTCATTGTTTTTCAAACATGTCTGCCCACGCGCGTAT
AGTTATGCGTACGATGACAAGACGAGTACCGTACACGTGCGGTTCTGCCG
ATTACGTTATCATATTTTGCCCGGCGCCTTATACAAGCCAAAAATTGCTG
GGATCAAGAAAAGATGGCGCA
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