CF504432

Overview
NameCF504432
Unique NameCF504432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504432 vs. ExPASy Swiss-Prot
Match: PRA1H_ARATH (PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.663e-23
Identity = 61/130 (46.92%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    1 LNVTDPAFESWLRDSGYLESLDXXXXXXXXXXXXXXXXXXXXXXXXXHS--------------LLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNY 348
            L+V DPAFESWLRDSGYLE LD                          S              LL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS    ++RVHEN+KR+ARNY
Sbjct:   10 LSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQQARMRVHENIKRFARNY 139          
The following BLAST results are available for this feature:
BLAST of CF504432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRA1H_ARATH8.663e-2346.92PRA1 family protein H OS=Arabidopsis thaliana GN=P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-921 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504432 ID=CF504432; Name=CF504432; organism=Citrus sinensis; type=EST; length=349bp
CTAAACGTAACCGACCCAGCATTCGAGTCATGGCTACGCGACTCCGGCTA
CCTCGAAAGCCTTGACACCGCCACCACGACATCGGCCACCGCCGTCACAA
CAGCCTCCACCAAAGAAACAGCCACAGCCACGACCATAACTCACAGCCTT
TTACATTATTTATACACCTTTATCTCTCTTCTTACCGCCAACCCTTTTGC
TAAACTCACCACTGATGATTTCTCAGCCAACACCCCGTCTTGGACCCGTG
AGTTTATTGGGGCTCTTGGGTCTTACTCGTTTCCATCTTCCCCACACACC
CTTAAGTTGAGAGTTCATGAGAATGTTAAACGTTATGCCAGGAATTATG
back to top