CF504446

Overview
NameCF504446
Unique NameCF504446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.294e-17
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331
            C+    P+C+C+ GF P+N + W++  W+GGC+RR  L C             DGF +++ MK+P   E + A  D+      CK +C+++C+C A+A       G GC+IWT  L DIR
Sbjct:  311 CDVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTQLSC-----------SGDGFTRMKKMKLP---ETTMATVDRSIGVKECKKRCISDCNCTAFANADIRNGGSGCVIWTERLEDIR 416          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIRK 334
            C+    P C+C+ GF PKNA  W+  + SGGCVR   L C          G+ DGF ++  MK+P   E S A  DK      C+++C+ +C+C  YA       G GC++WT  L D+RK
Sbjct:  317 CDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSC----------GEGDGFLRMSQMKLP---ETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK 424          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIRK 334
            C+    P C+C+ GF PKNA  W+  + SGGCVR   L C          G+ DGF ++  MK+P   E S A  DK      C+++C+ +C+C  YA       G GC++WT  L D+RK
Sbjct:  317 CDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSC----------GEGDGFLRMSQMKLP---ETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK 424          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331
            C     P+C+C+ GF P+N + W++  W+GGC+RR  L C             DGF +++ MK+P       +RS   ++ C+ +CL++C+C A+A       G GC+IWT  L D+R
Sbjct:  312 CGVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTRLSC-----------SGDGFTRMKNMKLPETTMAIVDRSIGVKE-CEKRCLSDCNCTAFANADIRNGGTGCVIWTGRLDDMR 417          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331
            C+    P+C+C+  F+P N ++W    WSGGC RR  L C             DGF +++ MK+P       +RS   ++ C+ +CL++C+C A+A       G GC+IWT  L DIR
Sbjct:  311 CDVNTSPVCNCIQRFDPSNVQEWGLRAWSGGCRRRTRLSC-----------SGDGFTRMKKMKLPETTMAIVDRSIGLKE-CEKRCLSDCNCTAFANADIRNGGTGCVIWTGQLEDIR 416          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331
            C+    P+C+C+ GF PKN + W+    + GC+RR  L C             DGF +++ MK+P        RS   ++ C+ +CL++C+C A+A       G GC+IWT  L DIR
Sbjct:  311 CDVNTSPVCNCIQGFRPKNRQQWDLRIPTSGCIRRTRLSC-----------SGDGFTRMKNMKLPETTMAIVHRSIGLKE-CEKRCLSDCNCTAFANADIRNRGTGCVIWTGELEDIR 416          
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.344e-14
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 2
Query:   23 ICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331
            IC+C+ GF P N + W++  W+GGC+RR           + + G  DGF +++ MK+P       +RS   ++ C+ +CLN+C+C A+A       G GC+I T  L D+R
Sbjct:  314 ICNCIQGFNPSNVQQWDQRVWAGGCIRR-----------TRLSGSGDGFTRMKNMKLPETTMAIVDRSIGVKE-CEKRCLNDCNCTAFANADIRNGGTGCVINTGELEDMR 412          
The following BLAST results are available for this feature:
BLAST of CF504446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SRK6_BRAOE5.294e-1735.83Putative serine/threonine-protein kinase receptor ... [more]
SLSG1_BRAOA1.540e-1638.02S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
SLSG0_BRAOA1.540e-1638.02S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG6_BRAOL3.431e-1634.75S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SLSG2_BRAOA2.905e-1535.59S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SLSG3_BRAOL4.194e-1434.75S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SLSG4_BRAOL9.344e-1435.14S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-935 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504446 ID=CF504446; Name=CF504446; organism=Citrus sinensis; type=EST; length=344bp
CTGTAATTCACAGAAAATACCAATTTGTAGCTGTCTGCTAGGGTTTGAGC
CAAAGAATGCAGAGGACTGGAACAGAGGAAACTGGTCTGGTGGGTGTGTC
AGAAGGAAGCCACTGCTTTGTCAAAGGACGGTCAAACCTAGTGAAGTTGA
GGGGAAACAAGATGGGTTCTTTAAGCTAGAGACTATGAAGGTGCCTTACT
TTGCTGAGCGGTCCTCTGCCAAGGAAGATAAATGCAAGGACCAGTGCCTG
AACAATTGTTCCTGCAAAGCATATGCTTATGAGATTGGCGTTGGTTGTAT
GATATGGACTCACAATTTAATCGACATTCGGAAATTACCCTCTG
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