CF504446
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.294e-17 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331 C+ P+C+C+ GF P+N + W++ W+GGC+RR L C DGF +++ MK+P E + A D+ CK +C+++C+C A+A G GC+IWT L DIR Sbjct: 311 CDVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTQLSC-----------SGDGFTRMKKMKLP---ETTMATVDRSIGVKECKKRCISDCNCTAFANADIRNGGSGCVIWTERLEDIR 416
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16 Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIRK 334 C+ P C+C+ GF PKNA W+ + SGGCVR L C G+ DGF ++ MK+P E S A DK C+++C+ +C+C YA G GC++WT L D+RK Sbjct: 317 CDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSC----------GEGDGFLRMSQMKLP---ETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK 424
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16 Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVPYFAERSSAKEDK------CKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIRK 334 C+ P C+C+ GF PKNA W+ + SGGCVR L C G+ DGF ++ MK+P E S A DK C+++C+ +C+C YA G GC++WT L D+RK Sbjct: 317 CDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSC----------GEGDGFLRMSQMKLP---ETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK 424
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16 Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331 C P+C+C+ GF P+N + W++ W+GGC+RR L C DGF +++ MK+P +RS ++ C+ +CL++C+C A+A G GC+IWT L D+R Sbjct: 312 CGVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTRLSC-----------SGDGFTRMKNMKLPETTMAIVDRSIGVKE-CEKRCLSDCNCTAFANADIRNGGTGCVIWTGRLDDMR 417
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15 Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331 C+ P+C+C+ F+P N ++W WSGGC RR L C DGF +++ MK+P +RS ++ C+ +CL++C+C A+A G GC+IWT L DIR Sbjct: 311 CDVNTSPVCNCIQRFDPSNVQEWGLRAWSGGCRRRTRLSC-----------SGDGFTRMKKMKLPETTMAIVDRSIGLKE-CEKRCLSDCNCTAFANADIRNGGTGCVIWTGQLEDIR 416
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14 Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2 Query: 2 CNSQKIPICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331 C+ P+C+C+ GF PKN + W+ + GC+RR L C DGF +++ MK+P RS ++ C+ +CL++C+C A+A G GC+IWT L DIR Sbjct: 311 CDVNTSPVCNCIQGFRPKNRQQWDLRIPTSGCIRRTRLSC-----------SGDGFTRMKNMKLPETTMAIVHRSIGLKE-CEKRCLSDCNCTAFANADIRNRGTGCVIWTGELEDIR 416
BLAST of CF504446 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.344e-14 Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 2 Query: 23 ICSCLLGFEPKNAEDWNRGNWSGGCVRRKPLLCQRTVKPSEVEGKQDGFFKLETMKVP----YFAERSSAKEDKCKDQCLNNCSCKAYA----YEIGVGCMIWTHNLIDIR 331 IC+C+ GF P N + W++ W+GGC+RR + + G DGF +++ MK+P +RS ++ C+ +CLN+C+C A+A G GC+I T L D+R Sbjct: 314 ICNCIQGFNPSNVQQWDQRVWAGGCIRR-----------TRLSGSGDGFTRMKNMKLPETTMAIVDRSIGVKE-CEKRCLNDCNCTAFANADIRNGGTGCVINTGELEDMR 412 The following BLAST results are available for this feature:
BLAST of CF504446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504446 ID=CF504446; Name=CF504446; organism=Citrus sinensis; type=EST; length=344bpback to top |