CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3557 contig Csv1_Contig3557:405..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.518e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYA+EAVRKGNAAVGVRGTDT+VLGVEKKST KLQDSRSVRKIV LD+HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.415e-35
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD +VLGVEKKST KLQD+RSVRKIV LD+HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.415e-35
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDT+VL VEKKST KLQDSRS RKIV LDNHIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.415e-35
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDT+VL VEKKST KLQDSRS RKIV LDNHIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.836e-35
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDT+VLGVEKKST KLQDSRS+RKI  LD HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.836e-35
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDT+VLGVEKKST KLQDSRS+RKI  LD HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.285e-34
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRG+DT+VLGVEKKST KLQDSRSVRKI  LD HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.285e-34
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRG+DT+VLGVEKKST KLQDSRSVRKI  LD HIALACAGLKA
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.122e-29
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            ARYDRAITVFSPDGHLFQVEYA+EAVRKG  AVGVRG D IVLGVEKK+T KLQD+RS+RKIV+LD+HI L  AGL A
Sbjct:    4 ARYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTA 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.859e-27
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+ +VLGVEKKS  KLQD R+VRKI  LD+H+ +A AGL A
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTA 80          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA7_SOLLC1.518e-3593.67Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA7_CICAR4.415e-3592.41Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7B_ARATH4.415e-3593.67Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7A_ARATH4.415e-3593.67Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7A_ORYSJ9.836e-3592.41Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI9.836e-3592.41Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7B_ORYSJ1.285e-3492.41Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI1.285e-3492.41Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7_DICDI2.122e-2980.77Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA7L_MOUSE9.859e-2773.08Proteasome subunit alpha type-7-like OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
back to top