CF504450

Overview
NameCF504450
Unique NameCF504450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504450_ssr197 microsatellite CF504450_ssr197:197..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13371 contig Csv1_Contig13371:146..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.992e-31
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 2
Query:    5 NGSTPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAG 346
            +GSTPL+ LSKP S P +   +  P I+AMK MQGRVVCA+SDKTVAVEVVRL PHP            QAHDP+NQF+VGD+V+LEKSRPISKTKSF+A+ +  R A K  AG
Sbjct:   21 HGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARKAEAG 134          
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.134e-25
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   20 LTRLSKPPSTPQNLPYSS---FPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGES 352
            L R S P S+PQ    +    FP IKAMK M+G+VVCAS +KTVAVEV RL PHP            QAHDPEN F+VGD+VQL K+RPISK K+F+AV  P R + K  AG S
Sbjct:   11 LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK--AGSS 122          
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.235e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   11 STPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 340
            S+P   +S PP    +       +I+A +++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L+ SRPISKTK F+A+ +PPR+  +K+
Sbjct:    5 SSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114          
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 QIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 340
            +I+A K++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L +SRPISKTK F+AV +PPR+  +K+
Sbjct:   33 RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS 119          
The following BLAST results are available for this feature:
BLAST of CF504450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RR17_ARATH4.992e-3161.4030S ribosomal protein S17, chloroplastic OS=Arabid... [more]
RR17_PEA3.134e-2555.2630S ribosomal protein S17, chloroplastic (Fragment... [more]
RR17_MAIZE4.235e-2246.3630S ribosomal protein S17, chloroplastic OS=Zea ma... [more]
RR17_ORYSJ2.102e-2155.1730S ribosomal protein S17, chloroplastic OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-939 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504450 ID=CF504450; Name=CF504450; organism=Citrus sinensis; type=EST; length=362bp
CCTCAATGGCTCCACTCCTCTTACTCGCCTCTCAAAACCCCCTTCCACTC
CGCAAAATCTCCCCTATTCTTCGTTTCCTCAAATCAAGGCCATGAAAAAA
ATGCAGGGCAGAGTTGTTTGTGCATCAAGCGACAAGACAGTTGCTGTTGA
AGTTGTGCGTTTAGACCCACATCCAAAGTACAAAAGAAGAATCAGAAAGA
AGAAGAAGTATCAAGCTCATGACCCTGAGAATCAATTCCAAGTTGGTGAC
CTTGTTCAGCTTGAAAAGTCCAGGCCCATTAGCAAGACTAAATCTTTTAT
TGCTGTGGCCATGCCCCCAAGGAATGCGAGCAAGAAAGCTGCTGGTGAGA
GTAGTAATGCCG
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