CF504461

Overview
NameCF504461
Unique NameCF504461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2483 contig Csv1_Contig2483:64..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPIAVGD +PDGT+++FDE DQLQ  SVHSLAAGKKVILFGVPGAFTPTCS+KHVPGFIEKA+ELKSKGVDEI+C SVNDPFVMK
Sbjct:    1 MAPIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMK 86          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.864e-37
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPI VGD +PDGT+++FDE DQLQ VSVHS+AAGKKVILFGVPGAFTPTCS+ HVPGFI KA+ELKSKG+DEI+C SVNDPFVMK
Sbjct:    1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMK 86          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.864e-37
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPI VGD +PDGT+++FDE DQLQ VSVHS+AAGKKVILFGVPGAFTPTCS+ HVPGFI KA+ELKSKG+DEI+C SVNDPFVMK
Sbjct:    1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMK 86          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.771e-34
Identity = 66/86 (76.74%), Postives = 78/86 (90.70%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAP+AVGD LPDG L +FD +D+LQQVSVH LAAGKKV+LFGVPGAFTPTCS +HVPGFI +A++LK+KGVD+IL +SVNDPFVMK
Sbjct:    1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMK 86          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.617e-32
Identity = 63/85 (74.12%), Postives = 76/85 (89.41%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            MAPI VGD +PDG++++FD+ DQLQ VSVHSLAAGKKVILFGVPGAF PTCS+ HV GFIEKA+ELKS GVDEI+C+S +DPF++
Sbjct:    1 MAPIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMI 85          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.536e-27
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 3
Query:   60 APIAVGDPLPDGTLAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            A IAVGD LPD TL+YFD  D +L+ V+V  L AGKKV+LF VPGAFTPTC+ KHVPGF+ KA EL++KGVD + C+SVND FVM+
Sbjct:   69 ATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMR 154          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.377e-27
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            +A IAVGD LPD TL+YFD  D +L+ V+V  L AG+K +LF VPGAFTPTCS KH+PGFIEKA EL +KGVD I C+SVND FVM+
Sbjct:   60 VATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMR 146          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 3
Query:   60 APIAVGDPLPDGTLAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            A I+VGD LPD TL+Y D     ++ V+V SL AGKK ILF VPGAFTPTCS KHVPGF+ KA EL+SKG+D I CISVND FVM+
Sbjct:   71 ASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVME 156          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_HUMAN (Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=PRDX5 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.379e-17
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            MAPI VGD +P   +  F E +   +V++  L  GKK +LFGVPGAFTP CS  H+PGF+E+A+ LK+KGV  + C+SVND FV
Sbjct:   53 MAPIKVGDAIP--AVEVF-EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFV 133          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_BOVIN (Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.379e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            MAPI VGD +P   +    E++   +V++  L  GKK +LFG+PGAFTP CS  H+PGF+E+AD LK+KG+  + C++VND FV
Sbjct:   58 MAPIKVGDAIPSVEVF---EKEPGNKVNLAELFKGKKGVLFGLPGAFTPGCSKTHLPGFVEQADALKAKGIQVVACLTVNDVFV 138          
The following BLAST results are available for this feature:
BLAST of CF504461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PRX2B_ARATH1.433e-3886.05Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2D_ARATH7.864e-3781.40Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH7.864e-3781.40Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2C_ORYSJ4.771e-3476.74Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2A_ARATH7.617e-3274.12Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PR2E1_ORYSJ2.536e-2766.28Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PR2E2_ORYSJ7.377e-2766.67Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2E_ARATH1.391e-2566.28Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PRDX5_HUMAN2.379e-1753.57Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=... [more]
PRDX5_BOVIN2.379e-1750.00Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-950 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504461 ID=CF504461; Name=CF504461; organism=Citrus sinensis; type=EST; length=315bp
CCCTACGGTGGTAATCGTGTATTTAATCACAGGCGCGGATCAGATTCTAT
CTCTAAATGGCTCCTATCGCAGTCGGTGACCCCTTGCCGGACGGTACTCT
AGCTTACTTCGACGAACAAGATCAGTTGCAGCAAGTGTCCGTACACTCGC
TCGCTGCCGGTAAAAAGGTCATCCTCTTTGGCGTCCCCGGTGCTTTCACT
CCTACTTGCAGCTTGAAGCATGTGCCTGGATTCATCGAGAAGGCTGATGA
GTTGAAGTCAAAAGGCGTCGATGAAATTCTCTGCATAAGCGTTAATGACC
CATTTGTGATGAAGG
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