CF504467

Overview
NameCF504467
Unique NameCF504467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2156 contig Csv1_Contig2156:42..314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504467 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   28 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPT 273
            A K      SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL+NKRK KPT
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPT 84          
BLAST of CF504467 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   43 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPT 273
            T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPLVN+RK KPT
Sbjct:    7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPT 83          
BLAST of CF504467 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.103e-25
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   25 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPT 273
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPT
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPT 83          
BLAST of CF504467 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.028e-24
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   25 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP 270
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKP 82          
The following BLAST results are available for this feature:
BLAST of CF504467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL6_MESCR1.834e-2565.8560S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH1.834e-2568.8360S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH9.103e-2563.8660S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH2.028e-2463.4160S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-956 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504467 ID=CF504467; Name=CF504467; organism=Citrus sinensis; type=EST; length=273bp
GTAGCAGAGAGCGGCTTCAACGAAATGGCGCCGAAAGCTGCGACTGGAAG
AACGAGCCGTAACCCGGACCTCATACGCGGCGTTGGCAAGTTCTCCAGAT
CCAAAATGTACCACAAGCGCGGCCTCTGGGCAATCAAGGCAAAAAACGGC
GGCGTTTTCCCGAAACACGACCCAAAGCCTGCTGCCGCTGAGACGCCAGC
CAAGCCTCCCAAGTTCTACCCAGCTGATGATGTCAAGAAGCCGCTCGTCA
ACAAGCGAAAGCACAAACCCACC
back to top